PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g038290.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 399aa    MW: 45448.4 Da    PI: 5.6568
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g038290.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM97.91.4e-30461752128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     ppG+ ++P+d e++   L +k +       l + +  i+ v+iy+++P++L +k+k+ ++++w+f skr+k  + gkr++r+ k gyW+at  +k
  Csa06g038290.1  46 PPGVNYRPKDFEVI-SLLGRKQDYLGgirdLLA-NLsIHLVNIYESNPEQLSEKFKKgNDTDWFFISKRNKMGKDGKRQKRVDKGGYWHATVASK 138
                     9*************.788888776665544223.345**************96665526779**********99********************* PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + ++ lvg k+ L +y g++p+g+kt+W+mhey +
  Csa06g038290.1 139 KIDA-GQGLVGYKTALSYYVGKQPNGVKTSWLMHEYWI 175
                     **99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-3638196IPR003441NAC domain
PROSITE profilePS5100536.41345197IPR003441NAC domain
PfamPF023654.0E-1446173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MSMPGRNKRK ERSLQEPEPE PEPSEIPSSS ADHDLSSSPS TRPCFPPGVN YRPKDFEVIS  60
LLGRKQDYLG GIRDLLANLS IHLVNIYESN PEQLSEKFKK GNDTDWFFIS KRNKMGKDGK  120
RQKRVDKGGY WHATVASKKI DAGQGLVGYK TALSYYVGKQ PNGVKTSWLM HEYWIDQCPP  180
SADDDVKDYS MCKIYRSTQA INKKKKAEEE ENEKQKKPRD LAYQQQQQQF WPGPIISYRP  240
HRSQFWEARP DSHQLQPHYD SAYQQLIRTL EGEDVGVLQE QQPSLAPPPP QGQDSRSGMV  300
MTQEDVLDTS KDDDLFDMID AWLKNVEEQQ HGVDTQQQQQ EQSTPILPPP QGQDSTISGN  360
VMTDQDSDAI LFSNVEEHGV TTQQQQANNN SKVHRFLL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-20372039171NO APICAL MERISTEM PROTEIN
1ut4_B3e-20372039171NO APICAL MERISTEM PROTEIN
1ut7_A3e-20372039171NO APICAL MERISTEM PROTEIN
1ut7_B3e-20372039171NO APICAL MERISTEM PROTEIN
4dul_A3e-20372039171NAC domain-containing protein 19
4dul_B3e-20372039171NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g038290.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010431411.11e-167PREDICTED: NAC transcription factor 29-like
TrEMBLR0H2592e-73R0H259_9BRAS; Uncharacterized protein
STRINGXP_010431411.11e-167(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56530.14e-52NAC domain containing protein 64