PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g038020.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bZIP
Protein Properties Length: 407aa    MW: 42951.3 Da    PI: 5.8963
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g038020.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_171.61.2e-22300362163
                     XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
          bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                     ++elkr+rrkq+NRe+ArrsR+RK+ae++eL++++++L  eN+ L+ e+++lk ++++l++e+
  Csa06g038020.1 300 DRELKRQRRKQSNRESARRSRLRKQAECDELAQRAEVLNDENTNLRAEINKLKSQCEELTAEN 362
                     689*********************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077772.7E-288103IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165966.5E-45142269No hitNo description
Gene3DG3DSA:1.20.5.1701.9E-17293359No hitNo description
SMARTSM003382.9E-20300364IPR004827Basic-leucine zipper domain
PfamPF001703.9E-20301362IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.093302365IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.13E-11303359No hitNo description
CDDcd147024.43E-24305355No hitNo description
PROSITE patternPS000360307322IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MASSENVEKS SKEKEPKTPP SSSALPSSQE PSSAVSAGMA TPDWSGFQAY SPMPPPHGYV  60
ASSPQPHPYM WGVQHMMPPY GTPPHPYVAM YPPGGMYAHP SMPPGSYPYS PYAMPSPNGM  120
TEASGNTTGG TEGDPKQPEV KDKLPIKRSR GSLGSLNMIT GKNNEPGKYS VASANGAYSK  180
SGESASDGSS EGSDGNSQNE SGSGQDGKDA SENGGSANGP GNGSAGTPLL PVNQTVPIMP  240
MTAAGVPGPP TNLNIGMDYW GAPTSSAIPG MHGKLSTSVP GVVAPITRDG GHSQPWLQDD  300
RELKRQRRKQ SNRESARRSR LRKQAECDEL AQRAEVLNDE NTNLRAEINK LKSQCEELTA  360
ENTSLKDQLL LFPPLEGINM DKNGHEPDSD QTGAAERKVD SYKDSK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1316322RRSRLRK
2316323RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds to the G-box motif (5'-CACGTG-3') and other cis-acting elements with 5'-ACGT-3' core, such as Hex, C-box and as-1 motifs. Possesses high binding affinity to G-box, much lower affinity to Hex and C-box, and little affinity to as-1 element (PubMed:18315949). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control (Probable). Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional repressor in light-regulated expression of LHCB2.4. Binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:18315949, ECO:0000269|PubMed:22718771, ECO:0000305|PubMed:18315949}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g038020.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0220550.0BT022055.1 Arabidopsis thaliana At2g35530 gene, complete cds.
GenBankBT0264410.0BT026441.1 Arabidopsis thaliana At2g35530 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516731.10.0PREDICTED: bZIP transcription factor 16-like
SwissprotQ501B20.0BZP16_ARATH; bZIP transcription factor 16
TrEMBLA0A178VPW60.0A0A178VPW6_ARATH; BZIP16
STRINGXP_010516731.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37012557
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G35530.10.0basic region/leucine zipper transcription factor 16
Publications ? help Back to Top
  1. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]