PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa06g037710.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 416aa MW: 47013.6 Da PI: 8.6919

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa06g037710.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38	3e-12	259	304	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h e+Er+RR+++N++f Lr ++Pk K++K + L ++ YIk+L Csa06g037710.1 259 DHVEAERQRRKQLNQRFYALRGVVPKV-----SKMDKGSLLSDTIAYIKEL 304 599*********************6.....5**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	4.8E-38	31	191	IPR025610	Transcription factor MYC/MYB N-terminal
PROSITE profile	PS50888	15.783	255	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.33E-16	257	326	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.0E-16	259	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	2.22E-11	260	309	No hit	No description
Pfam	PF00010	9.6E-10	260	304	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	9.7E-15	261	310	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence Send to blast
MTQYNNAEDS TMEGFMSFLD NPEMWPVENV QKRLQAVLDG THKGWAYAIY WQPLLDNFGD 60 TVLVWGDGVY KGQEDKRTTL SSPAEKVTGE LNHEDNDVIV KDIEWFFLKS MSWSFSRGSG 120 LVGHAFSTST PVWVSGLDQI RKSDIERAKA GGDFGTQTIA CIPLANGVVE LGSRELIPQS 180 SDLINKVPIL FNSNTFHHSV SRDRVNVAPS SSSMVLSKSR KLESGCSSPT NKSFSSEVSE 240 KLLKKRGKKS SKGREEPRDH VEAERQRRKQ LNQRFYALRG VVPKVSKMDK GSLLSDTIAY 300 IKELKSKVEK AVYERNEIQI QLEEVKRKVA SSKETEGMEI EVKIIECYAM IKVKSSKQNH 360 PEARFMKALK DLELEVDHAS IVVVEDLMVQ QATVKMDFRI YTQEQLRTML ISKIY*

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence Send to blast

MTQYNNAEDS TMEGFMSFLD NPEMWPVENV QKRLQAVLDG THKGWAYAIY WQPLLDNFGD  60
TVLVWGDGVY KGQEDKRTTL SSPAEKVTGE LNHEDNDVIV KDIEWFFLKS MSWSFSRGSG  120
LVGHAFSTST PVWVSGLDQI RKSDIERAKA GGDFGTQTIA CIPLANGVVE LGSRELIPQS  180
SDLINKVPIL FNSNTFHHSV SRDRVNVAPS SSSMVLSKSR KLESGCSSPT NKSFSSEVSE  240
KLLKKRGKKS SKGREEPRDH VEAERQRRKQ LNQRFYALRG VVPKVSKMDK GSLLSDTIAY  300
IKELKSKVEK AVYERNEIQI QLEEVKRKVA SSKETEGMEI EVKIIECYAM IKVKSSKQNH  360
PEARFMKALK DLELEVDHAS IVVVEDLMVQ QATVKMDFRI YTQEQLRTML ISKIY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4rqw_A	2e-33	28	194	7	195	Transcription factor MYC3
4rqw_B	2e-33	28	194	7	195	Transcription factor MYC3
4rs9_A	2e-33	28	194	7	195	Transcription factor MYC3
4yz6_A	2e-33	28	194	7	195	Transcription factor MYC3
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa06g037710.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010412880.1	0.0	PREDICTED: transcription factor MYC2-like
Swissprot	Q9LUK7	1e-106	BH028_ARATH; Transcription factor bHLH28
TrEMBL	R0HCK7	0.0	R0HCK7_9BRAS; Uncharacterized protein
STRING	XP_010412880.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM21760	4	5

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32640.1	3e-63	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Chen X,Huang H,Qi T,Liu B,Song S New perspective of the bHLH-MYB complex in jasmonate-regulated plant fertility in arabidopsis. Plant Signal Behav, 2016. 11(2): p. e1135280 [PMID:26829586] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470] Song S, et al. MYC5 is Involved in Jasmonate-Regulated Plant Growth, Leaf Senescence and Defense Responses. Plant Cell Physiol., 2017. 58(10): p. 1752-1763 [PMID:29017003] Min JH, et al. Arabidopsis Basic Helix-Loop-Helix 34 (bHLH34) Is Involved in Glucose Signaling through Binding to a GAGA Cis-Element. Front Plant Sci, 2017. 8: p. 2100 [PMID:29321786]