PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g031280.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 586aa    MW: 67368.3 Da    PI: 4.456
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g031280.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM93.33.9e-29581872128
             NAM   2 ppGfrFhPtdeelvveyLkkk...vegkk.leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     ppGf ++P+d e+    L++k   + g++ +   +  i+ v+iy+++P++L  k+k+ +++ew+f sk++k  + gk+++r  k gyW+at  ++
  Csa06g031280.1  58 PPGFNYRPKDLEVF-LLLCRKrdyLGGNRdFL-VDLpIHLVNIYESNPEELTVKFKKgNDTEWFFVSKKNKMGKGGKKQKRGDKGGYWHATVASN 150
                     9***********99.56666624233333333.3555**************96555526679999999999999999****99************ PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     e+ + ++ lvg k+ L +y g++p+g+kt+W+mhey +
  Csa06g031280.1 151 EIDD-GQGLVGYKTALSYYVGKQPNGVKTSWLMHEYWV 187
                     **99.999****************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-3548211IPR003441NAC domain
PROSITE profilePS5100535.51357211IPR003441NAC domain
PfamPF023651.2E-1258185IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MSSMPGRNKR KERSLPEPEP EPSGIPSSSA DDDHHLSSSS SADHSLSSPP STRRLCFPPG  60
FNYRPKDLEV FLLLCRKRDY LGGNRDFLVD LPIHLVNIYE SNPEELTVKF KKGNDTEWFF  120
VSKKNKMGKG GKKQKRGDKG GYWHATVASN EIDDGQGLVG YKTALSYYVG KQPNGVKTSW  180
LMHEYWVDQC PPSTSADDDF KDYSLCKIYR SPQAINKKKK EENETQKKVV QQQPPTVEYH  240
QPQPQPHHDI AYQQQPLFQP APLDSYQPQP RDLAYQQQQF WPSPLDSYRP HQWQFGASRP  300
DSHQLQPYYD YAYQQLIRTL EEENVGVQQQ LAPPPPPQGQ DSRSGMVMTH EDGFFNPIYE  360
LLNYEEEHGV VTEQQQQEQS APILPPPPPQ GHQLQPYYDF AYLQQQFLLT TTLEEENVGV  420
TKQQEQELSL PPPPPPQGDQ DSRSKMAMTR LSNDNSTEED LFDMSDEDRF FEVDAVFSNE  480
EEEDGVNTQQ QQQEQCTPIL PYDMVYQQPQ YCLLPTEHQK PQTQPFPYNF PELISFEQEP  540
VIPEDFEDFF ADFIKPHSLN GDEDSSSYGL FEGFDTEGMI KDCTH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A4e-205521718174NAC domain-containing protein 19
3swm_B4e-205521718174NAC domain-containing protein 19
3swm_C4e-205521718174NAC domain-containing protein 19
3swm_D4e-205521718174NAC domain-containing protein 19
3swp_A4e-205521718174NAC domain-containing protein 19
3swp_B4e-205521718174NAC domain-containing protein 19
3swp_C4e-205521718174NAC domain-containing protein 19
3swp_D4e-205521718174NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g031280.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507484.10.0PREDICTED: uncharacterized protein LOC104784116
STRINGXP_010412802.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.13e-50NAC domain containing protein 63