PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g031260.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 581aa    MW: 66721.7 Da    PI: 4.4562
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g031260.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.31.1e-30461752128
             NAM   2 ppGfrFhPtdeelvveyLkkkvegkk....leleev.ikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                     ppG+ ++P+d e++   L +k +       l l++  i+ v+iy+++P++L     ka+++ewyf s+r+k  + gkr++r++k gyW+at  ++
  Csa06g031260.1  46 PPGVNYRPKDLEVI-SLLGRKQDYLGgnrdL-LATLsIHLVNIYESNPEELSvDFKKANDTEWYFISERNKMGKDGKRQKRVAKGGYWHATVASN 138
                     9*************.7787775443333332.22335**************9434455788********************************** PP

             NAM  91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     ++ + ++ lvg k  L +y g++p+g+kt+W+mhey +
  Csa06g031260.1 139 KIDA-GQGLVGYKIALSYYVGKRPNGKKTSWLMHEYWI 175
                     **99.999****************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.79E-3435195IPR003441NAC domain
PROSITE profilePS5100535.81945196IPR003441NAC domain
PfamPF023655.9E-1446173IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSMPGRNKRK ERSLPEPEPE PSGIPSSSAD DDHHMSSSPS TRPCFPPGVN YRPKDLEVIS  60
LLGRKQDYLG GNRDLLATLS IHLVNIYESN PEELSVDFKK ANDTEWYFIS ERNKMGKDGK  120
RQKRVAKGGY WHATVASNKI DAGQGLVGYK IALSYYVGKR PNGKKTSWLM HEYWIDQCPS  180
ADDDVKGYSM CKIYRSTQAI NKQKKAEEEE NKKQKKVVQQ QPPSVEFHQP HAPLDSYQPQ  240
PHHDIAYRQQ PLFQPAPLDS YQPQPRDLAY QQQQFWPGPL DSYRPHQWQF GASRPDSHQL  300
QPYYDYAYQQ LIRTLEEENV GVQQQLAPPP PPQGQDSRSG MVMSQEDGFF NPIYELLNYE  360
EEHGVVTEQQ QQEQSAPILP PPPQGHQLQP YYDFAYLQQQ FLMTTTLEDE NVGVTKQQEQ  420
ELSLPPPPPP QGDQDSRSKM AMTRLSNDNS TEEDLFDMSD EDRFFDVDAL FSNEEEEEDG  480
VDTQQQQQEQ CTPILPYDMV YQQPQYCLLP AEHQKPQTQP FPYNFPELIS FEQEPVIPED  540
FEGFFADFIK PHSLNGDEDS SSYGLFEGFD TEGMIKDCTH *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A4e-18342023171NO APICAL MERISTEM PROTEIN
1ut4_B4e-18342023171NO APICAL MERISTEM PROTEIN
1ut7_A4e-18342023171NO APICAL MERISTEM PROTEIN
1ut7_B4e-18342023171NO APICAL MERISTEM PROTEIN
3swm_A5e-183720212174NAC domain-containing protein 19
3swm_B5e-183720212174NAC domain-containing protein 19
3swm_C5e-183720212174NAC domain-containing protein 19
3swm_D5e-183720212174NAC domain-containing protein 19
3swp_A5e-183720212174NAC domain-containing protein 19
3swp_B5e-183720212174NAC domain-containing protein 19
3swp_C5e-183720212174NAC domain-containing protein 19
3swp_D5e-183720212174NAC domain-containing protein 19
4dul_A4e-18342023171NAC domain-containing protein 19
4dul_B4e-18342023171NAC domain-containing protein 19
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g031260.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010507484.10.0PREDICTED: uncharacterized protein LOC104784116
STRINGXP_010412801.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.14e-59NAC domain containing protein 63