PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g031120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 263aa    MW: 29684.5 Da    PI: 5.5878
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g031120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY811.3e-25128188259
                     --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                     dD y+WrKYGqKe+ gs+fpr+YYr t++   +Cp+kk+v+r +edp ++ +tY+++H+++
  Csa06g031120.1 128 DDNYTWRKYGQKEILGSTFPRAYYRGTHQklyKCPAKKQVQRLDEDPYTFRVTYRSSHTCH 188
                     8****************************9999**************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.2E-25122188IPR003657WRKY domain
SuperFamilySSF1182903.66E-22126189IPR003657WRKY domain
SMARTSM007741.3E-30127189IPR003657WRKY domain
PfamPF031068.6E-23128188IPR003657WRKY domain
PROSITE profilePS5081118.716128190IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEEIMTMIFN GINLVKELEF SLSSQEPPES DLSSSLGSIS TLFGDANERL TILLAWRNSL  60
PQQEPVRMMD MTMQTEPALT QDHWLRCPVM RTVEAIDTSR PRHQKRRIIG EEETVLVAAV  120
GRMEIPPDDN YTWRKYGQKE ILGSTFPRAY YRGTHQKLYK CPAKKQVQRL DEDPYTFRVT  180
YRSSHTCHLT NFPISSAHAT TTTANVPAIV NLTEAMIGNM DSVVPLLGEP YFNHHCLVPG  240
DDGDGDTWNS PSQRYDMSSG PS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-18128187968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g031120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516245.10.0PREDICTED: WRKY transcription factor 55-like
SwissprotQ9SHB52e-68WRK55_ARATH; WRKY transcription factor 55
TrEMBLR0HL291e-142R0HL29_9BRAS; Uncharacterized protein
STRINGXP_010516245.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36412757
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-63WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    An extracellular subtilase switch for immune priming in Arabidopsis.
    PLoS Pathog., 2013. 9(6): p. e1003445
    [PMID:23818851]
  2. Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P
    Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis.
    PLoS Pathog., 2016. 12(11): p. e1006003
    [PMID:27806116]