PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g026120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family HSF
Protein Properties Length: 362aa    MW: 41852.7 Da    PI: 5.0593
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g026120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1062.9e-33281192102
                     HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXX CS
    HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellek 96 
                     Fl+k++e+++d+++++++sw++ g+sfvv+d  +f++ +Lp++Fkh nf+SF+RQLn+YgF+k++ e+         weF+++ F  g+++ll++
  Csa06g026120.1  28 FLTKTFEMVDDPNTDQIVSWNRGGTSFVVWDLYSFSTILLPRHFKHCNFSSFIRQLNTYGFRKIEAER---------WEFANEGFLVGQRQLLKN 113
                     9****************************************************************999.........****************** PP

                     XXXXXX CS
    HSF_DNA-bind  97 ikrkks 102
                     ikr+++
  Csa06g026120.1 114 IKRRTN 119
                     ***986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004156.1E-5624117IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.102.6E-3524117IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467851.07E-3224117IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.2E-182851IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004474.4E-2928117IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-186678IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406791IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.2E-187991IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MNPFVPEGYD QPPPQPMEGL HEVGPPPFLT KTFEMVDDPN TDQIVSWNRG GTSFVVWDLY  60
SFSTILLPRH FKHCNFSSFI RQLNTYGFRK IEAERWEFAN EGFLVGQRQL LKNIKRRTNF  120
SSSSSSSSSS TPSGHDAACN ELRREKQVLM MELMSLRQQH QTTKSYVKAM EQRIEGAEMK  180
QRQMMSFLAR AMQSPSFLHQ LLKQRDKRIK EIEDETAKWK RGSSSVSELE ALALEMQGYG  240
KQRSLLEEDD HHLVVERELD DGFWEELLSD ETFAYLSQCQ DKSTXLKQRD KRIKEIEDET  300
AKWKRGSSSV SELEALALEM QGYGKQRSLL EEDDHHLVVE RELDDGFWEE LLSDESLAST  360
S*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A3e-232611818121Heat shock factor protein 1
5d5u_B4e-231911817130Heat shock factor protein 1
5d5v_B4e-231911817130Heat shock factor protein 1
5d5v_D4e-231911817130Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110116LKNIKRR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g026120.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515630.10.0PREDICTED: heat stress transcription factor A-7a-like
SwissprotQ9SV121e-160HFA7A_ARATH; Heat stress transcription factor A-7a
TrEMBLD7LTZ91e-160D7LTZ9_ARALL; AT-HSFA7A
STRINGXP_010515630.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12562899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51910.11e-150heat shock transcription factor A7A
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Guan Q,Yue X,Zeng H,Zhu J
    The protein phosphatase RCF2 and its interacting partner NAC019 are critical for heat stress-responsive gene regulation and thermotolerance in Arabidopsis.
    Plant Cell, 2014. 26(1): p. 438-53
    [PMID:24415771]
  3. Nie S,Yue H,Xing D
    A Potential Role for Mitochondrial Produced Reactive Oxygen Species in Salicylic Acid-Mediated Plant Acquired Thermotolerance.
    Plant Physiol., 2016.
    [PMID:26099269]