PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g025220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 312aa    MW: 34385.4 Da    PI: 6.8685
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g025220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA59.35.1e-19218252135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     Cs+Cg+ kTp+WR gp g ktLCnaCG+++++ +l
  Csa06g025220.1 218 CSHCGVQKTPQWRAGPKGAKTLCNACGVRFKSGRL 252
                     *******************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169924.3E-918310IPR016679Transcription factor, GATA, plant
SuperFamilySSF577169.5E-14211274No hitNo description
SMARTSM004012.8E-15212266IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.097212248IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.106.2E-15216250IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.05E-15217266No hitNo description
PfamPF003206.1E-17218252IPR000679Zinc finger, GATA-type
PROSITE patternPS003440218243IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009416Biological Processresponse to light stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MESVVELALK NSSITLTNGG AHNGDDFSVD DLLDFSNEDE DEDALVEDET DLKKSQRKRG  60
LSSDETTLHL TNDFSAVDFP TTELAVPMDD LAELEWLSNF VDDSLTPYSS LAPTKKPVWL  120
TGNRRRSVPP VKEKTCFKAP PPPPVQIRPK RARTGVTFWS HGSPSSSSSS ATSSSSSSGP  180
PSSPLWLSGF ELDLLDEPRV KKQKKMKKLA GQTQTRRCSH CGVQKTPQWR AGPKGAKTLC  240
NACGVRFKSG RLLPEYRPAC SPTFSRELHS NHHRKVIEMR RKKETSQEEG DDDDETTGLN  300
QTVQAQPVPS F*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00404DAPTransfer from AT3G51080Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g025220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010515491.10.0PREDICTED: GATA transcription factor 6-like
SwissprotQ9SD381e-123GATA6_ARATH; GATA transcription factor 6
TrEMBLA0A178VKT01e-120A0A178VKT0_ARATH; GATA transcription factor
STRINGXP_010515491.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36982561
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51080.11e-94GATA transcription factor 6
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]