PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa06g019820.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 369aa MW: 40273.2 Da PI: 10.3328 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.5 | 0.00043 | 75 | 97 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H Csa06g019820.1 75 HPCPICGVNFPMGQALGGHMRRH 97 78********************9 PP | |||||||
2 | zf-C2H2 | 11.9 | 0.00069 | 281 | 303 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + Cp+Cg F+ L H+r+H Csa06g019820.1 281 HICPICGLDFPMGQALGGHMRKH 303 68********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.62E-6 | 24 | 97 | No hit | No description |
Pfam | PF13912 | 3.9E-11 | 25 | 50 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.141 | 26 | 48 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.63 | 26 | 48 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 28 | 48 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.762 | 75 | 102 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.7E-10 | 75 | 98 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.25 | 75 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 77 | 97 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.76E-7 | 228 | 303 | No hit | No description |
Pfam | PF13912 | 4.5E-11 | 229 | 254 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.432 | 230 | 257 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.33 | 230 | 252 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 232 | 252 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 10.492 | 281 | 308 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.1E-9 | 281 | 304 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 281 | 303 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 283 | 303 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 369 aa Download sequence Send to blast |
MNDTAARCLM LLPRVGEYGG GEKRVYRCKT CLKEFSTFQA LGGHRASHKK LINSEDPSLL 60 GSLSNKKTKA AMTSHPCPIC GVNFPMGQAL GGHMRRHRNE KASGTSLVTR SFLPEATTVT 120 TLKKCSSGKR VACLDLDLDS MDSLVNWKLE LETRTRHTNL TPTLERKQKT KENPRRASLN 180 SIQDFETMVA TRENLDPTMD KAAANCLMLL SRVGGGGGGE GTALKEKRVF RCKTCKREFS 240 SFQALGGHRA SHNKPTNNGD VTSIPGSPKK KTPTKTTTTI HICPICGLDF PMGQALGGHM 300 RKHRNEKEKA SNNELVTRSF LPENATLTTT TLKKSSSSGK RVACLDFADL AAVETLVNTN 360 LELGRTMY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa06g019820.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010514933.1 | 1e-107 | PREDICTED: zinc finger protein ZAT8-like | ||||
Swissprot | Q9LX85 | 2e-85 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A178VI57 | 1e-77 | A0A178VI57_ARATH; ZAT7 | ||||
STRING | XP_010514933.1 | 1e-106 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 2e-80 | C2H2 family protein |