PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g007190.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 338aa    MW: 39712 Da    PI: 9.0205
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g007190.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM49.51.4e-151913110128
             NAM  10 tdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglk 103
                      d+el++++L   +++ + + ++++++vd+++ +P++       +++ ++ F+ ++++   gk  +   +sg W+  g+dk + s+ +g+  g k
  Csa06g007190.1  19 DDDELISYHLDSILKNGNAKPNNFFQDVDVFNKNPREVF----DSKNPIFAFVMSRTEDC-GK--TDGCESGCWRIMGNDKLIRSEkTGKFLGFK 106
                     599***************999899**************5....24567788887766543.33..334579*************9866777**** PP

             NAM 104 ktLvfykgrapkgektdWvmheyrl 128
                     ++L f ++++ +  k +Wvm+eyrl
  Csa06g007190.1 107 RILKFCEKKKLREYKRTWVMEEYRL 131
                     ***********************98 PP
2NAM36.41.5e-1121030934128
             NAM  34 ikevdiykvePwd...LpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgekt 119
                      ++ d+y veP++   L+++++  +k+ +fF+kr k+  +   +    + g W+  g+dk v+sk+g++ g+k+++ f          + + ++ 
  Csa06g007190.1 210 STSNDVYCVEPSThvsLEQSYEDLKKRRFFFVKRTKACGK---TD-GCDGGCWRIMGRDKVVKSKEGKVHGIKRVFKFIktvqqrYVLQGQDVEV 300
                     456699*****86211444555556678****99998753...33.3578*****************************4443221233444589 PP

             NAM 120 dWvmheyrl 128
                     +Wvm+eyrl
  Csa06g007190.1 301 TWVMEEYRL 309
                     9******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100523.30510150IPR003441NAC domain
SuperFamilySSF1019419.55E-2419148IPR003441NAC domain
PfamPF023651.5E-919131IPR003441NAC domain
PROSITE profilePS5100516.86172325IPR003441NAC domain
SuperFamilySSF1019417.19E-18197323IPR003441NAC domain
PfamPF023655.5E-7205309IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MMEMEMEIEN DVLYVHDEDD DELISYHLDS ILKNGNAKPN NFFQDVDVFN KNPREVFDSK  60
NPIFAFVMSR TEDCGKTDGC ESGCWRIMGN DKLIRSEKTG KFLGFKRILK FCEKKKLREY  120
KRTWVMEEYR LVNRGKRDDE AAVICKIRLM FETKITFLLA KHFSYLFTSQ SLPFPARISL  180
SDYGIGLPYS SPDDLSYLQM LIDKKGNIWS TSNDVYCVEP STHVSLEQSY EDLKKRRFFF  240
VKRTKACGKT DGCDGGCWRI MGRDKVVKSK EGKVHGIKRV FKFIKTVQQR YVLQGQDVEV  300
TWVMEEYRLT KKKKQDEVIC VIKLLFPYLL NHLLRRW*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g007190.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010514414.10.0PREDICTED: uncharacterized protein LOC104790373
TrEMBLR0GIC31e-102R0GIC3_9BRAS; Uncharacterized protein
STRINGXP_010514414.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-97NAC family protein