PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g006850.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 176aa    MW: 20795.6 Da    PI: 4.7923
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g006850.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM51.53.2e-1691261126
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 
                     lp G+ F+Pt  e+ + +Lkkkv g+++e+ +v  ++ di++   +dLp     +e++wy+F++r++        n++t+s  W  tg++++vl+
  Csa06g006850.1   9 LPIGVVFRPTKFEMANIFLKKKVLGQSIEAPRVPGDChDIFSRRLRDLPGY--PREEHWYYFCRRRR--------NQVTSSNLWTPTGEETNVLD 93 
                     699***************************99988888***********43..4789*******965........6689999************9 PP

             NAM  95 k..kgelvglkktLvfykgrapkgektdWvmhey 126
                        ++ +v +++ +++ ++++++g + dW+++e 
  Csa06g006850.1  94 PknRRLVVATRRRFTLLEKQEEEG-EYDWFLDEI 126
                     854555699********8888887.89****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-217145IPR003441NAC domain
PROSITE profilePS5100524.089145IPR003441NAC domain
PfamPF023652.4E-910125IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MEPIINRPLP IGVVFRPTKF EMANIFLKKK VLGQSIEAPR VPGDCHDIFS RRLRDLPGYP  60
REEHWYYFCR RRRNQVTSSN LWTPTGEETN VLDPKNRRLV VATRRRFTLL EKQEEEGEYD  120
WFLDEIILPP AVSHSDWVLC HILGKKIEPE IEYFPPLIES EYDEYESEDE ESVDT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16072REEHWYYFCRRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g006850.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010412390.11e-126PREDICTED: NAC domain-containing protein 62-like
TrEMBLD7LLY96e-76D7LLY9_ARALL; Uncharacterized protein
STRINGXP_010412390.11e-126(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86041736
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56520.11e-66NAC family protein