PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06g001410.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WOX
Protein Properties Length: 240aa    MW: 27679.4 Da    PI: 7.9751
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06g001410.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.77.2e-223291357
                    --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
        Homeobox  3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                    +R+++t+eq+++Lee++++ +r+p++e+++++A+kl    +++ ++V++WFqN++a++k+
  Csa06g001410.1 32 SRWNPTPEQITTLEEVYRSgTRTPTTEQIQKIASKLrkygRIEGKNVFYWFQNHKARQKR 91
                    7*****************99***************************************7 PP
2Wus_type_Homeobox112.62e-363092264
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqk 64
                       +++RW+PtpeQi+ Lee+y+sG+rtP++e+iq+i+++L++yG+ie+kNVfyWFQN+kaR++++
     Csa06g001410.1 30 TTSRWNPTPEQITTLEEVYRSGTRTPTTEQIQKIASKLRKYGRIEGKNVFYWFQNHKARQKRR 92
                       679**********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-91492IPR009057Homeodomain-like
PROSITE profilePS5007111.9692792IPR001356Homeobox domain
SMARTSM003896.6E-82996IPR001356Homeobox domain
SuperFamilySSF466891.2E-133194IPR009057Homeodomain-like
PfamPF000461.6E-193291IPR001356Homeobox domain
CDDcd000862.54E-63393No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 240 aa     Download sequence    Send to blast
EINGNDHHQL VPASSGEHDD GKSNISVAAT TSRWNPTPEQ ITTLEEVYRS GTRTPTTEQI  60
QKIASKLRKY GRIEGKNVFY WFQNHKARQK RRRREGVATN NVREPHQDVK ESSSGGYRVD  120
RTKSCLSFPQ TDPQPQRELV PASYKKDDNA NNEDHGRTKE SERPSEDGKD ITWRNLVTSS  180
SVTQEEPGEE VETREIRTLN LFPVLENQEK TSWFKEKKNA NANQACCNYC FYYEFLPLKN
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role in ovule patterning by regulating cell proliferation of the maternal integuments and differentiation of the maegaspore mother cell (MCC). Involved in AGAMOUS (AG) repression in leaves. {ECO:0000269|PubMed:15659481}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06g001410.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2546041e-106AC254604.1 Capsella rubella clone CAP23-D18, complete sequence.
GenBankAC2546071e-106AC254607.1 Capsella rubella clone CAP08-M18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513873.11e-180PREDICTED: WUSCHEL-related homeobox 6-like
SwissprotQ9ZVF51e-103WOX6_ARATH; WUSCHEL-related homeobox 6
TrEMBLR0HMG91e-125R0HMG9_9BRAS; Uncharacterized protein
STRINGXP_010513873.11e-179(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM133691828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G01500.11e-96WOX family protein