PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa06084s010.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 173aa    MW: 20195.9 Da    PI: 10.2111
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa06084s010.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP262.11.2e-19122172256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr+++ +g+WvAeIr p++   r+r++lg+f tae+Aa a++ a+  l+ge
  Csa06084s010.1 122 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFETAEQAAMAYDTAAYILRGE 172
                     59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.06E-27121172No hitNo description
PROSITE profilePS5103220.784122173IPR001471AP2/ERF domain
SuperFamilySSF541712.48E-19122173IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.8E-27122172IPR001471AP2/ERF domain
SMARTSM003801.7E-22122172IPR001471AP2/ERF domain
PfamPF008474.4E-13123172IPR001471AP2/ERF domain
PRINTSPR003671.2E-11123134IPR001471AP2/ERF domain
PRINTSPR003671.2E-11145161IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
ELTSSSHQSP VASVPWNFLE SFPQFDQRPD HPSKPPNLTL FLKEPKLLEL SQSDSNMIPY  60
HKYIPNSLYQ SDQTRNEWVE INKTLTNYPS KGFGNYWLST TKTQPMKSKT RKVVQTTTPT  120
KLYRGVRQRH WGKWVAEIRL PRNRTRVWLG TFETAEQAAM AYDTAAYILR GEF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-17121171455ATERF1
3gcc_A2e-17121171455ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa06084s010.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAL0355280.0AL035528.2 Arabidopsis thaliana DNA chromosome 4, BAC clone F18A5 (ESSA project).
GenBankAL1615370.0AL161537.2 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 37.
GenBankBT0297290.0BT029729.1 Arabidopsis thaliana At4g13620 mRNA, complete cds.
GenBankCP0026870.0CP002687.1 Arabidopsis thaliana chromosome 4 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010440558.11e-126PREDICTED: ethylene-responsive transcription factor ERF062
RefseqXP_019089390.11e-126PREDICTED: ethylene-responsive transcription factor ERF062-like
SwissprotQ9SVQ01e-115ERF62_ARATH; Ethylene-responsive transcription factor ERF062
TrEMBLR0F9761e-117R0F976_9BRAS; Uncharacterized protein
STRINGXP_010440558.11e-125(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107992534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-117ERF family protein