PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g094160.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 299aa    MW: 33802.4 Da    PI: 9.1388
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g094160.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.65.3e-14122172154
                     CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
             HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                     +r +h ++Er+RR+++N+ ++ Lr llP++   + ++ + a+i+  A++Y+k L
  Csa05g094160.1 122 QRINHIAVERNRRRQMNEHISSLRALLPPS---YIQRGDQASIVGGAINYVKVL 172
                     699***************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000837.13E-12120177No hitNo description
SuperFamilySSF474591.2E-16121185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.58121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.3E-13121176IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.8E-11122172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-10127178IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 299 aa     Download sequence    Send to blast
MLQSEDPSSF FTIKEPNFLT LLSSLQTVKE PWELEHYPEF HSPVRFPISA SSMEGTSQAL  60
SSQELFLSQA NMTLPSSTSS PLTANSRRKR KTNNLLPQEM TREKRKRRKT KPSKNIEEIE  120
NQRINHIAVE RNRRRQMNEH ISSLRALLPP SYIQRGDQAS IVGGAINYVK VLEQIIQSLE  180
TQKRNSEGNA SNHHLSGISS NELWTTRKDQ SCIPKVEATV IQNHVSLKVE CLKKQGQLLK  240
GIVSLEKLRL TVLHLNIASS SHSSVSYSFQ LKMEDECELE SADEITAAVH QNFDIPMI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
188108KRKTNNLLPQEMTREKRKRRK
2103108KRKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g094160.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4886001e-153AF488600.1 Arabidopsis thaliana clone bHLH067 putative bHLH transcription factor mRNA, partial sequence.
GenBankAJ6304811e-153AJ630481.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g61950.
GenBankAK1185271e-153AK118527.1 Arabidopsis thaliana At3g61950 mRNA for putative bHLH transcription factor (bHLH067), complete cds, clone: RAFL19-75-M14.
GenBankAY0887411e-153AY088741.1 Arabidopsis thaliana clone 93825 mRNA, complete sequence.
GenBankBT0052981e-153BT005298.1 Arabidopsis thaliana At3g61950 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512575.10.0PREDICTED: transcription factor bHLH67
SwissprotQ700E41e-145BH067_ARATH; Transcription factor bHLH67
TrEMBLR0H7K91e-170R0H7K9_9BRAS; Uncharacterized protein
STRINGXP_010512575.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM31192666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.21e-147bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Yu H,Murchie EH,González-Carranza ZH,Pyke KA,Roberts JA
    Decreased photosynthesis in the erect panicle 3 (ep3) mutant of rice is associated with reduced stomatal conductance and attenuated guard cell development.
    J. Exp. Bot., 2015. 66(5): p. 1543-52
    [PMID:25582452]