PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g092350.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family GATA
Protein Properties Length: 250aa    MW: 27361.6 Da    PI: 7.7991
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g092350.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.34.5e-18169203135
            GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                     C++C + kTp+WR gp g+ktLCnaCG++y++ +l
  Csa05g092350.1 169 CTHCASEKTPQWRTGPLGPKTLCNACGVRYKSGRL 203
                     *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0169923.8E-882246IPR016679Transcription factor, GATA, plant
SMARTSM004011.7E-15163213IPR000679Zinc finger, GATA-type
PROSITE profilePS5011411.213163199IPR000679Zinc finger, GATA-type
SuperFamilySSF577161.66E-14165227No hitNo description
Gene3DG3DSA:3.30.50.104.1E-13165201IPR013088Zinc finger, NHR/GATA-type
CDDcd002022.32E-13169215No hitNo description
PROSITE patternPS003440169194IPR000679Zinc finger, GATA-type
PfamPF003206.5E-16169203IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MDVYGMSSPD LLRIDDLLDF SNDEIFSSSS SISTVTSSAA SSVASENPFN FRSSAYTSPP  60
PLLSDFTHDL CVPSDDAAHL EWLSRFVDDS FSDFPTNPLT MSVRPEVSFT GKPRSRRSRA  120
PAPSVAGTWA PMPESELCHG SVPKPKHKKE YNGESVTAEV GGGGARRCCT HCASEKTPQW  180
RTGPLGPKTL CNACGVRYKS GRLVPEYRPA SSPTFVLTQH SNSHRKVMEL RRQKEQQESY  240
VSIPAFQPR*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes. {ECO:0000269|PubMed:12139008}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g092350.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512383.10.0PREDICTED: GATA transcription factor 4-like
SwissprotO497431e-131GATA4_ARATH; GATA transcription factor 4
TrEMBLR0FQ221e-136R0FQ22_9BRAS; GATA transcription factor
STRINGXP_010512383.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32032666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60530.11e-110GATA transcription factor 4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]