PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g092230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 301aa    MW: 34087.2 Da    PI: 6.7196
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g092230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.47.9e-141257146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
                     +g+W +eEde l++ vk++G+++W++I ++  ++Rt+k+c++rw +
   Csa05g092230.1 12 KGPWKAEEDEVLINHVKRYGPRDWSSIRSKGLLHRTGKSCRLRWVN 57
                     79*************************888779***********87 PP
2Myb_DNA-binding39.31.5e-1268107344
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                      +++++E+   +++  ++G++ W++Ia +++ gRt++++k++w
   Csa05g092230.1  68 KFSADEERVVIELQSEFGNK-WARIATYLP-GRTDNDVKNFW 107
                      79******************.*********.*********** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-21460IPR009057Homeodomain-like
PROSITE profilePS5129422.155763IPR017930Myb domain
SuperFamilySSF466893.48E-2810107IPR009057Homeodomain-like
SMARTSM007173.1E-121161IPR001005SANT/Myb domain
CDDcd001679.34E-121459No hitNo description
PfamPF139215.3E-121565No hitNo description
Gene3DG3DSA:1.10.10.601.7E-1761113IPR009057Homeodomain-like
PROSITE profilePS5129417.74964115IPR017930Myb domain
SMARTSM007171.7E-1165113IPR001005SANT/Myb domain
CDDcd001671.78E-968107No hitNo description
PfamPF002492.8E-1168107IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
METNNKKEEI KKGPWKAEED EVLINHVKRY GPRDWSSIRS KGLLHRTGKS CRLRWVNKLR  60
PNLKNGCKFS ADEERVVIEL QSEFGNKWAR IATYLPGRTD NDVKNFWSSR QKRLARILHN  120
SSSDASTSSS HRCKGKHVKP IRQSCNPTQG FSLVEEEDIT VSSSSSLMKV PYSSSDQVDD  180
KGLRLPDLGI KLEHQPFTFG TDLVIAEFSD SHNDAANQQA LIPFSPESRE LLARLDDPFY  240
YDILGPADSS EPLFALPQPF SEPSPAPRRC RHVSKDEEAD VFLDDFPADM FDQVDPIRTP  300
*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C9e-28911324126MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that acts as a positive regulator of male germline development by promoting both gametic cell specification and cell cycle progression (PubMed:15694308, PubMed:15618418, PubMed:19300502, PubMed:21285328). Binds to canonical MYB sites 5'-AACCGTC-3', 5'-AAACCGC-3' and 5'-AACCGT-3' in promoters to trigger the expression of male germline-specific or enriched genes (e.g. MGH3, GEX2 and GCS1), including those required for fertilization (PubMed:21285328, PubMed:19300502). Required for sperm cell specification leading to pollen maturation by activating a germline-specific regulon (PubMed:21285328, PubMed:15694308, PubMed:15618418, PubMed:19300502). Involved in pollen mitosis entry at G2-M transition via the regulation of CYCB1-1, DAZ1 and DAZ2 expression (PubMed:15618418, PubMed:19300502, PubMed:24876252). {ECO:0000269|PubMed:15618418, ECO:0000269|PubMed:15694308, ECO:0000269|PubMed:19300502, ECO:0000269|PubMed:21285328, ECO:0000269|PubMed:24876252}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g092230.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by the microRNA 159 (miR159); the production of miR159 is stimulated by the anaphase promoting complex/cyclosome (APC/C) (PubMed:21441434). Activated by ARID1 in male germline cells via specific histone acetylation regulation (e.g. H3K9Ac) (PubMed:25057814). {ECO:0000269|PubMed:21441434, ECO:0000269|PubMed:25057814}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4694681e-151AF469468.1 Arabidopsis thaliana putative transcription factor (MYB125) mRNA, complete cds.
GenBankHM7765211e-151HM776521.1 Arabidopsis thaliana duo pollen 1 (DUO1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010512370.10.0PREDICTED: myb-related protein 305-like
SwissprotA0A178VEK71e-179DUO1_ARATH; Transcription factor DUO1
TrEMBLD7LRQ61e-179D7LRQ6_ARALL; Uncharacterized protein
STRINGXP_010512370.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65512842
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60460.11e-180MYB family protein
Publications ? help Back to Top
  1. Zheng B,He H,Zheng Y,Wu W,McCormick S
    An ARID domain-containing protein within nuclear bodies is required for sperm cell formation in Arabidopsis thaliana.
    PLoS Genet., 2014. 10(7): p. e1004421
    [PMID:25057814]
  2. Peters B, et al.
    A Conserved cis-Regulatory Module Determines Germline Fate through Activation of the Transcription Factor DUO1 Promoter.
    Plant Physiol., 2017. 173(1): p. 280-293
    [PMID:27624837]
  3. Zheng Z, et al.
    Target RNA Secondary Structure Is a Major Determinant of miR159 Efficacy.
    Plant Physiol., 2017. 174(3): p. 1764-1778
    [PMID:28515145]