PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g091840.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family MYB
Protein Properties Length: 643aa    MW: 71843.3 Da    PI: 4.4038
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g091840.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding285e-09112164248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 
                      + W t+E++ l +avk++   +W+++a+ ++      +  ++ +c++++q+++
   Csa05g091840.1 112 QVWGTWEELVLTCAVKRHAFTDWDSVAKDVQsrsrssLIASAVNCRLKYQDLK 164
                      68*****************************9998888889999999999875 PP
2Myb_DNA-binding285e-09370422248
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT......TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmg......kgRtlkqcksrwqkyl 48 
                      + W t+E++ l +avk++   +W+++a+ ++      +  ++ +c++++q+++
   Csa05g091840.1 370 QVWGTWEELVLTCAVKRHAFTDWDSVAKDVQsrsrssLIASAVNCRLKYQDLK 422
                      68*****************************9998888889999999999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM00717773374IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-5106165IPR009057Homeodomain-like
SMARTSM007170.04110166IPR001005SANT/Myb domain
PfamPF002491.4E-7112164IPR001005SANT/Myb domain
CDDcd001671.54E-4114164No hitNo description
SuperFamilySSF466893.23E-5365423IPR009057Homeodomain-like
SMARTSM007170.04368424IPR001005SANT/Myb domain
PfamPF002491.4E-7370422IPR001005SANT/Myb domain
CDDcd001671.54E-4372422No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 643 aa     Download sequence    Send to blast
MNDDDDTNNI NSCSGFDNNR IGDGDDNCNI NQISQVWGTW EELVLTCAVK RHAFTDWDSV  60
AKDVQSQQET VISNGMNDDD DTNNINSCSG FDNNRIGDGD GDDNCDINQI SQVWGTWEEL  120
VLTCAVKRHA FTDWDSVAKD VQSRSRSSLI ASAVNCRLKY QDLKRRFKDS VDGGEGNREA  180
AAEEDDEVGE IPWLDQLRSL HVAELRREVQ RRDDSILSLQ LKVKKLEEEE EEKDGDDGDN  240
KPDLGNDETK PAKLNRETTE SDRDDNRSMN ESNSTASVDK LADHDGDKMV DPDPVNKTAA  300
PKEEEEEEEE RTVSKRSEMS NSGELDESGT STGHGKRKGQ KKYRSGGGGG EIKSAGYKSQ  360
XNCDTNQISQ VWGTWEELVL TCAVKRHAFT DWDSVAKDVQ SRSRSSLIAS AVNCRLKYQD  420
LKRRFKDSVD GGEGNREAAA EEDDEVGEIP WLDQLRSLHV AELRREVQRR DDSILSLQLK  480
VKKLEEEEEE KDGDDGDNKP DLGNDETKPA KLNRETTESD RDDNRSMNES NSTASVDKLA  540
DHDGDKMVDP DPVNKTAAPK EEEEEEEERT VSKRSEMSNS GELDESGTST GHGKRKGQKK  600
YRSGGGGGEI KSAGYKSQPL IDIIKLIRSH PRGSVFESRL RSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g091840.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0563930.0AY056393.1 Arabidopsis thaliana AT3g60110/T2O9_90 mRNA, complete cds.
GenBankBT0005190.0BT000519.1 Arabidopsis thaliana unknown protein (At3g60110/T2O9_90) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019101722.10.0PREDICTED: transcriptional regulator ATRX-like
TrEMBLD7LWL11e-157D7LWL1_ARALL; Uncharacterized protein
STRINGXP_010512316.11e-175(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.11e-102DNA-binding bromodomain-containing protein