PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g086270.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 339aa MW: 38635.3 Da PI: 7.1013 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 65 | 7.6e-21 | 13 | 53 | 5 | 45 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 n rq t++kRr+gi+KKA+ELS+LCd++v +++fs+tgk Csa05g086270.2 13 NMNARQCTYAKRRHGIMKKAKELSILCDIDVVLLMFSPTGK 53 6778***********************************98 PP | |||||||
2 | K-box | 17 | 2.4e-07 | 117 | 186 | 18 | 88 |
K-box 18 qqelakLkkeienLqreqRhllGedLesL.slkeLqqLeqqLekslkkiRskKnellleqieelqkkekelq 88 +++++ L+ +++ + + R + +L+++ ++ +LqqLe+ L sl +i ++K + q ++l e ++q Csa05g086270.2 117 SEKVRFLRTQLSDIHT--RLSYWTNLDNInNVDDLQQLEDSLRLSLAQISARKASMPQHQQRQLMSSECKNQ 186 4444555555555543..567788888883589********************9988877777666555554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 22.413 | 1 | 53 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-26 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-23 | 2 | 93 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00120 | 1.26E-20 | 2 | 53 | No hit | No description |
PRINTS | PR00404 | 6.0E-15 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.5E-18 | 13 | 54 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-15 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 6.0E-15 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 7.089 | 106 | 205 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 339 aa Download sequence Send to blast |
MGRVKLKIMK LRNMNARQCT YAKRRHGIMK KAKELSILCD IDVVLLMFSP TGKASLCLGK 60 NSIGEVIAKF AQLTPQERAK RKLENLEALK KMFMKLDHDV DISEFLDRST PTVEVLSEKV 120 RFLRTQLSDI HTRLSYWTNL DNINNVDDLQ QLEDSLRLSL AQISARKASM PQHQQRQLMS 180 SECKNQLQTE IDIDFGIEME QQLENFSWVR TTDENMNVPI KEENPYLQVH QMYKDITCSA 240 SSSLGNYSGL STPKLETGSI PGIPADPSLQ FGNPSFLNDQ KLQKLAEWNL LGSPAFSQVL 300 EAFHKPQLGG NKYNWTSPET LPYVAIFDDP LYFWPSEQ* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that forms heterodimers with the MADS-box proteins AGL66 and AGL104 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g086270.2 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB115013 | 0.0 | AB115013.1 Arabidopsis thaliana At1g69540 mRNA for MADS-box protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512000.1 | 0.0 | PREDICTED: agamous-like MADS-box protein AGL30 isoform X3 | ||||
Swissprot | Q1PFA4 | 1e-80 | AGL30_ARATH; Agamous-like MADS-box protein AGL30 | ||||
TrEMBL | D7KXG6 | 0.0 | D7KXG6_ARALL; Predicted protein | ||||
STRING | XP_010511995.1 | 0.0 | (Camelina sativa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G69540.1 | 0.0 | AGAMOUS-like 94 |
Publications ? help Back to Top | |||
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