PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g085380.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family TCP
Protein Properties Length: 359aa    MW: 40698.5 Da    PI: 6.6103
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g085380.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP138.74.8e-431112393134
             TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaak 96 
                     +k+drhski+T++g+RdRR+Rls+++a+rfFdLqd+LGfdk+sktieWL+ ++k++ik+l ++ + s+     +++++ ++++++  + +  + +
  Csa05g085380.1 111 KKRDRHSKICTAQGPRDRRMRLSLQIARRFFDLQDMLGFDKASKTIEWLFSKSKASIKQLKESVAASE--GgGDAEHVPANGKEK--DDQILKVE 201
                     79*************************************************************44444..323444444444322..33333345 PP

             TCP  97 skksqksaasalnlakesrakarararertrekmrikn 134
                      +k+++++ + + ++kesr++ar+rarert  km+++ 
  Csa05g085380.1 202 VSKRRTKTMESSCKMKESRERARKRARERTMTKMKMRF 239
                     5566666666699999*******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.3E-35111237IPR005333Transcription factor, TCP
PROSITE profilePS5136936.3112170IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.384217234IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MFPSLDTNGY DLFDPFSPHQ ATMLPSFTTH IQSPSSHHHF PLPSFPFSPD FLDNVDESFL  60
LSQFLLQEQD AAANVFESPR KDCKKLEKKK KNEECVEDTT SETVPRRRTV KKRDRHSKIC  120
TAQGPRDRRM RLSLQIARRF FDLQDMLGFD KASKTIEWLF SKSKASIKQL KESVAASEGG  180
GDAEHVPANG KEKDDQILKV EVSKRRTKTM ESSCKMKESR ERARKRARER TMTKMKMRFS  240
GLTDTSETIS DPHQETREIK ITNGEQAIEG KSQEQEWSTN VNMVEYQMDS VSIIEKFLGL  300
TSDSSSSSIF GDSEESNTSL SSIRGIVAPN EHNTASIASV DEETNPISSF SLYDYLCY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219229RERARKRARER
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that prevents axillary bud outgrowth. May also delay early axillary bud development. Probably involved in the auxin-induced control of apical dominance. {ECO:0000269|PubMed:17307924}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g085380.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed transiently after shoot apical meristem (SAM) decapitation (release from apical dominance). {ECO:0000269|PubMed:17307924}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4085610.0AM408561.1 Arabidopsis thaliana mRNA for BRANCHED2 (brc2 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010511900.10.0PREDICTED: transcription factor TCP12-like
SwissprotA0AQW41e-178TCP12_ARATH; Transcription factor TCP12
TrEMBLR0IEY80.0R0IEY8_9BRAS; Uncharacterized protein (Fragment)
STRINGXP_010511900.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116322533
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.11e-129TCP domain protein 12