PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g084910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25544.7 Da PI: 7.2223 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 93.8 | 1.9e-29 | 4 | 104 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++dC+++p++ +++q++++ +++k++G++ +l+l+++ p++ r+++++sl+yeA+ r+ +Pv G+vg+++++++ +q+ Csa05g084910.1 4 SCNGCRVLRKGCNQDCTIRPCLqwiksADSQANATLFLAKFYGRAGLLNLIESGPDHLRPAIFRSLLYEACGRIVNPVDGSVGLMWSGNWAQCQA 98 6*********************9999767889*************************************************************** PP DUF260 91 kaelal 96 +++++l Csa05g084910.1 99 AVDAVL 104 999876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 15.85 | 3 | 109 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 3.8E-23 | 4 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MRISCNGCRV LRKGCNQDCT IRPCLQWIKS ADSQANATLF LAKFYGRAGL LNLIESGPDH 60 LRPAIFRSLL YEACGRIVNP VDGSVGLMWS GNWAQCQAAV DAVLNGLPIT HTPLPSASAS 120 HQIIPPHRTY DIRHVAKDPT TGGDSSESLA TRVNADKGKT QTGRLKRHAE SVNQLGECSH 180 DTWQLPSSGA THGYGHFTLE TVESRREAPL DQSSSNLGFD DQVDINEVGL ELRLG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g084910.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473869 | 0.0 | AB473869.1 Arabidopsis thaliana ASL36 mRNA for ASYMMETRIC LEAVES2-like 36 protein, complete cds. | |||
GenBank | AF447896 | 0.0 | AF447896.1 Arabidopsis thaliana LOB DOMAIN 42 (LBD42) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010511848.1 | 1e-176 | PREDICTED: LOB domain-containing protein 42-like | ||||
Swissprot | Q9CA30 | 1e-167 | LBD42_ARATH; LOB domain-containing protein 42 | ||||
TrEMBL | A0A178W6D5 | 1e-164 | A0A178W6D5_ARATH; LBD42 | ||||
STRING | XP_010511848.1 | 1e-175 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8463 | 26 | 39 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68510.1 | 1e-169 | LOB domain-containing protein 42 |