PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g083550.2
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family bHLH
Protein Properties Length: 227aa    MW: 25611.7 Da    PI: 4.9096
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g083550.2genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.22.2e-06144168327
                     HHHHHHHHHHHHHHHHHHHHHHCTS CS
             HLH   3 rahnerErrRRdriNsafeeLrell 27 
                     +a n  E+rRR +iN ++e+L+el 
  Csa05g083550.2 144 EARNLTEKRRRTDINAKIETLKELT 168
                     5789******************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000832.77E-6136192No hitNo description
SuperFamilySSF474591.07E-8139197IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-7139195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.268141190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MNFNYYDQDT NEFWSSFSQS FVVPDPRDEF YPAIRSPITA MPISMAVDVP AEPWKVLEDG  60
DNDIALWNNA AAEVDAKNND ELLQAIIAWK PMEEGKEKEK EKGKEKEKGK EKEKGKGKGK  120
GKEKEDVAVE ETMTLSKRRR GNTEARNLTE KRRRTDINAK IETLKELTRC TEKKDLVSTL  180
DCIISNITEL KQYVEAFYYP PSHDTVNGHG DGLSTGRSGT MDVPSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1137153RRRGNTEARNLTEKRRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g083550.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010415444.25e-79PREDICTED: uncharacterized protein LOC104701444
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28800.11e-07bHLH family protein