PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g083190.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

BBR-BPC

Protein Properties

Length: 358aa MW: 40285.7 Da PI: 10.0614

Description

BBR-BPC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g083190.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GAGA_bind	45.1	3.8e-14	85	214	1	125
GAGA_bind 1 mdddgsrernkgyyepaaslkenlglqlmssiaerdaki.....rernlalsekkaav...........aerd........maflqrdkalaern 71 m++dg ++rn+gyyep+ +++ nlg+ql+ s+ +r++k+ +++n+++++++ + +rd m++ ++l++ Csa05g083190.1 85 MNEDGLNNRNWGYYEPS-QFRPNLGFQLIPSVIDRNEKPfivspQNQNQNFITPNVLYrgggsssslmsFPRDytasdapfMSY----SWLNQ-- 172 99************9.********************************999966666666655444477776666666....88888.. PP GAGA_bind 72 kalverdnkllalllvenslasalpvgvqvlsgtksidslqqlsepqledsave 125 +rd+k++++++ + s + +++t+ + + ql +p++ed++ + Csa05g083190.1 173 ----HRDSKFFSNVPSNPS--------NHLVPETSRMTQPMQLLQPEVEDESLK 214 ....9*******96554........334455555544444455666666555 PP
2	GAGA_bind	270	1.2e-82	214	357	159	301
GAGA_bind 159 pkekkakkkkkksekskkkvkkesad.erskaekksidlvlngvslDestlPvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrg 252 ++++++ ++k k+ek+ k+ ++++++ ers +ksi++v+ngvs+D++ lPvPvCsCtG+++qCY+WG+GGWqSaCCtt++S+yPLP+s+krrg Csa05g083190.1 214 KRKHQRGAPKTKKEKKLKDDNMPRVQrERSPFFRKSIEMVINGVSMDIGCLPVPVCSCTGMPQQCYRWGCGGWQSACCTTNVSMYPLPISAKRRG 308 233333356666666777778888877999*************************************************************** PP GAGA_bind 253 aRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkfvtir 301 aRiagrKmSqgaf+k+LekL+a+G+d+s p+DLk+hWAkHGtnkfvtir Csa05g083190.1 309 ARIAGRKMSQGAFRKVLEKLSADGFDFSIPIDLKSHWAKHGTNKFVTIR 357 **********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01226	1.7E-141	85	357	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	6.8E-7	85	208	IPR010409	GAGA-binding transcriptional activator
Pfam	PF06217	1.1E-75	215	357	IPR010409	GAGA-binding transcriptional activator

Sequence ? help Back to Top
Protein Sequence Length: 358 aa Download sequence Send to blast
MEFRVWVLCR QMELSILLGF VVAKKKCISS FEAVIFACLA VIALPSQPLS FLSPLTVKDA 60 AVVVVTPRSV FVSSLASVLF SYIMMNEDGL NNRNWGYYEP SQFRPNLGFQ LIPSVIDRNE 120 KPFIVSPQNQ NQNFITPNVL YRGGGSSSSL MSFPRDYTAS DAPFMSYSWL NQHRDSKFFS 180 NVPSNPSNHL VPETSRMTQP MQLLQPEVED ESLKRKHQRG APKTKKEKKL KDDNMPRVQR 240 ERSPFFRKSI EMVINGVSMD IGCLPVPVCS CTGMPQQCYR WGCGGWQSAC CTTNVSMYPL 300 PISAKRRGAR IAGRKMSQGA FRKVLEKLSA DGFDFSIPID LKSHWAKHGT NKFVTIR*

Sequence ? help Back to Top

Protein Sequence Length: 358 aa Download sequence Send to blast

MEFRVWVLCR QMELSILLGF VVAKKKCISS FEAVIFACLA VIALPSQPLS FLSPLTVKDA  60
AVVVVTPRSV FVSSLASVLF SYIMMNEDGL NNRNWGYYEP SQFRPNLGFQ LIPSVIDRNE  120
KPFIVSPQNQ NQNFITPNVL YRGGGSSSSL MSFPRDYTAS DAPFMSYSWL NQHRDSKFFS  180
NVPSNPSNHL VPETSRMTQP MQLLQPEVED ESLKRKHQRG APKTKKEKKL KDDNMPRVQR  240
ERSPFFRKSI EMVINGVSMD IGCLPVPVCS CTGMPQQCYR WGCGGWQSAC CTTNVSMYPL  300
PISAKRRGAR IAGRKMSQGA FRKVLEKLSA DGFDFSIPID LKSHWAKHGT NKFVTIR*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. {ECO:0000269\|PubMed:14731261}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g083190.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC012563	1e-135	AC012563.7 Arabidopsis thaliana chromosome 1 BAC T23K23 genomic sequence, complete sequence.
GenBank	AY380569	1e-135	AY380569.1 Arabidopsis thaliana basic pentacysteine 3 (BPC3) mRNA, complete cds.
GenBank	BT022117	1e-135	BT022117.1 Arabidopsis thaliana At1g68120 mRNA, complete cds.
GenBank	CP002684	1e-135	CP002684.1 Arabidopsis thaliana chromosome 1 sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511770.1	0.0	PREDICTED: protein BASIC PENTACYSTEINE3-like
Swissprot	Q9C9X6	1e-156	BPC3_ARATH; Protein BASIC PENTACYSTEINE3
TrEMBL	R0GFA2	1e-169	R0GFA2_9BRAS; Uncharacterized protein
STRING	XP_010511770.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15347	15	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68120.1	1e-148	basic pentacysteine 3