PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g072110.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 530aa MW: 56910 Da PI: 6.7703

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g072110.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	13.7	0.00012	208	229	9	30
HHHHHHHHHHHHHHHHCTSCCC CS HLH 9 ErrRRdriNsafeeLrellPka 30 ++RR+ri +++ L+el+P+ Csa05g072110.1 208 AKNRRERISERLKILQELVPNG 229 69******************94 PP
2	HLH	29.5	1.3e-09	441	482	9	55
HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++RR+ri +++ L+el+P+ +K++ +++LekA+ Y+k Lq Csa05g072110.1 441 AKNRRERISERLKILQELVPNG-----TKVDLVTMLEKAISYVKFLQ 482 69****************97.....8****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00083	0.00241	198	232	No hit	No description
SMART	SM00353	4.1	205	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.35E-12	431	486	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.3E-11	432	489	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	15.32	432	481	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.4E-13	432	492	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	5.0E-12	438	487	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.8E-7	441	482	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 530 aa Download sequence Send to blast
MALVNDHPSE TNYMSKQNSS SSEDLSSPGL DQPDTAYAGG GGGGSASSSS TMNSDHQQHQ 60 GFVFYPSGEE HHNSLMDFNG SSFLNFDHHE SFPPPAISCG GSSGGSGFSF LEGNNMSYGF 120 TNWNQNHMDI ISPRSTETPQ GQKDWLYSDS TVVTTGSRHE SMSPKSAGNK RSHTGESTQP 180 SKKPNNGGNG KAKPKPTSSP KDPQSLAAKN RRERISERLK ILQELVPNGT KCLMALVNDH 240 PSETNYMSKQ NSSSSEDLSS PGLDQPDTAY AGGGGGGSAS SSSTMNSDHQ QHQGFVFYPS 300 GEEHHNSLMD FNGSSFLNFD HHESFPPPAI SCGGSSGGSG FSFLEGNNMS YGFTNWNQNH 360 MDIISPRSTE TPQGQKDWLY SDSTVVTTGS RHESMSPKSA GNKRSHTGES TQPSKKPNNG 420 GNGKAKPKPT SSPKDPQSLA AKNRRERISE RLKILQELVP NGTKVDLVTM LEKAISYVKF 480 LQVQVKVLAT DEFWPAQGGK APDISQVKDA IDAILSSSQR DRTSNLITN*

Sequence ? help Back to Top

Protein Sequence Length: 530 aa Download sequence Send to blast

MALVNDHPSE TNYMSKQNSS SSEDLSSPGL DQPDTAYAGG GGGGSASSSS TMNSDHQQHQ  60
GFVFYPSGEE HHNSLMDFNG SSFLNFDHHE SFPPPAISCG GSSGGSGFSF LEGNNMSYGF  120
TNWNQNHMDI ISPRSTETPQ GQKDWLYSDS TVVTTGSRHE SMSPKSAGNK RSHTGESTQP  180
SKKPNNGGNG KAKPKPTSSP KDPQSLAAKN RRERISERLK ILQELVPNGT KCLMALVNDH  240
PSETNYMSKQ NSSSSEDLSS PGLDQPDTAY AGGGGGGSAS SSSTMNSDHQ QHQGFVFYPS  300
GEEHHNSLMD FNGSSFLNFD HHESFPPPAI SCGGSSGGSG FSFLEGNNMS YGFTNWNQNH  360
MDIISPRSTE TPQGQKDWLY SDSTVVTTGS RHESMSPKSA GNKRSHTGES TQPSKKPNNG  420
GNGKAKPKPT SSPKDPQSLA AKNRRERISE RLKILQELVP NGTKVDLVTM LEKAISYVKF  480
LQVQVKVLAT DEFWPAQGGK APDISQVKDA IDAILSSSQR DRTSNLITN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g072110.1

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY128310	0.0	AY128310.1 Arabidopsis thaliana unknown protein (At1g66470) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010511472.1	0.0	PREDICTED: transcription factor bHLH83-like
Swissprot	Q9C707	1e-175	BH083_ARATH; Transcription factor bHLH83
TrEMBL	D7KTQ8	0.0	D7KTQ8_ARALL; Basic helix-loop-helix family protein
STRING	XP_010511472.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66470.1	1e-160	ROOT HAIR DEFECTIVE6

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Coego A, et al. The TRANSPLANTA collection of Arabidopsis lines: a resource for functional analysis of transcription factors based on their conditional overexpression. Plant J., 2014. 77(6): p. 944-53 [PMID:24456507] Lin CY, et al. Pathways involved in vanadate-induced root hair formation in Arabidopsis. Physiol Plant, 2015. 153(1): p. 137-48 [PMID:24833217] Grierson C,Nielsen E,Ketelaarc T,Schiefelbein J Root hairs. Arabidopsis Book, 2014. 12: p. e0172 [PMID:24982600] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Moro CF, et al. S-nitrosoglutathione promotes cell wall remodelling, alters the transcriptional profile and induces root hair formation in the hairless root hair defective 6 (rhd6) mutant of Arabidopsis thaliana. New Phytol., 2017. 213(4): p. 1771-1786 [PMID:27880005] Bahmani R,Kim DG,Kim JA,Hwang S The Density and Length of Root Hairs Are Enhanced in Response to Cadmium and Arsenic by Modulating Gene Expressions Involved in Fate Determination and Morphogenesis of Root Hairs in Arabidopsis. Front Plant Sci, 2016. 7: p. 1763 [PMID:27933081] Liao X,Lovett B,Fang W,St Leger RJ Metarhizium robertsii produces indole-3-acetic acid, which promotes root growth in Arabidopsis and enhances virulence to insects. Microbiology (Reading, Engl.), 2017. 163(7): p. 980-991 [PMID:28708056] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]