PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g070860.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 179aa    MW: 20335.6 Da    PI: 5.9362
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g070860.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.97.6e-1456071128
             NAM  71 gkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                     gk+++r+ k gyW+at  +k++ +  g lvg k+ L+ y g++p+g++tdW++hey +
  Csa05g070860.1   5 GKKQKRVDKGGYWHATVATKKIDD--GGLVGYKTALANYVGKQPSGVQTDWLVHEYWV 60 
                     789999****************88..889***************************76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100518.48183IPR003441NAC domain
SuperFamilySSF1019417.59E-14467IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 179 aa     Download sequence    Send to blast
MGKGGKKQKR VDKGGYWHAT VATKKIDDGG LVGYKTALAN YVGKQPSGVQ TDWLVHEYWV  60
DESSADAEKI YRSPQAINKK KAEEEENEKQ TQALEDDVEQ QSRTIDSHQP QQFSKAPLDC  120
YQPQPCDSAY QQRQFWSGPL DSYQPQPHHI AYEQLIFQPA PLDSYQAQPH EIVLFRLL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g070860.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513537.11e-130PREDICTED: NAC domain-containing protein 62-like
TrEMBLR0GGB11e-32R0GGB1_9BRAS; Uncharacterized protein
STRINGXP_010513537.11e-130(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM27931563
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G55210.15e-36NAC domain containing protein 63