PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g047230.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 345aa    MW: 39991.5 Da    PI: 5.3888
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g047230.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM43.88.1e-143414511128
             NAM  11 deelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkk 104
                     d+ +v++yLk+ + +++  +  + ++vd+++++P +       ++++  f + + ++++ gk      +sg W+  g+dk ++sk +g++ g kk
  Csa05g047230.1  34 DDVIVSRYLKRIIVNEDAWEGLFTQDVDVFETNPYEEF-----DSESSTFLIVEPRTKNCGKADG--CESGCWRIMGRDKLIKSKeTGKVLGFKK 121
                     777999******9999977656699*********8753.....2344455555555555554443..579*************99788899**** PP

             NAM 105 tLvfykgrapkgektdWvmheyrl 128
                     +L f  +r+p+  k +Wvm+e+rl
  Csa05g047230.1 122 ILKFCVKRKPREYKRSWVMEEFRL 145
                     **********************98 PP
2NAM27.11.2e-0823032437128
             NAM  37 vdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgelvglkktLvfy....k..grapkgektdWvmh 124
                      ++y+++Pw+L      +++    F +   +++t   + +  + gyW+    d  + s+ +ge++g kk+L fy    +   r+ +  + +W+++
  Csa05g047230.1 230 NNVYRLNPWKLV-D--LHDQMFRNFGTCIFANQTCGDTDK-CDGGYWRILHPDVMINSRsSGETIGFKKVLKFYetekQrfVREGEEINVTWTID 320
                     489********6.3..344444445555555555556666.478************99988899**********54431224555566899**** PP

             NAM 125 eyrl 128
                     eyrl
  Csa05g047230.1 321 EYRL 324
                     **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100524.1724164IPR003441NAC domain
PfamPF023651.2E-733145IPR003441NAC domain
SuperFamilySSF1019415.62E-2534163IPR003441NAC domain
PROSITE profilePS5100517.004193342IPR003441NAC domain
SuperFamilySSF1019417.45E-20217338IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MEDDELSNGE DEATYKEITR ELIKAADELL DAEDDVIVSR YLKRIIVNED AWEGLFTQDV  60
DVFETNPYEE FDSESSTFLI VEPRTKNCGK ADGCESGCWR IMGRDKLIKS KETGKVLGFK  120
KILKFCVKRK PREYKRSWVM EEFRLTNNLN WNQDPLVICK IRFLFEAETS SLLAKHFSYL  180
STTEPVPVPA SLLLPAYGFK SIDQRKADEA HVLRIPAVYQ GKNWPSHVTN NVYRLNPWKL  240
VDLHDQMFRN FGTCIFANQT CGDTDKCDGG YWRILHPDVM INSRSSGETI GFKKVLKFYE  300
TEKQRFVREG EEINVTWTID EYRLVDKEMQ NKVLSVIKIT TKDN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g047230.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513366.10.0PREDICTED: uncharacterized protein LOC104789348
TrEMBLR0GIC31e-176R0GIC3_9BRAS; Uncharacterized protein
STRINGXP_010513366.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-128NAC family protein