PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g047220.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NAC
Protein Properties Length: 235aa    MW: 27601.6 Da    PI: 8.1644
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g047220.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM317.4e-1012121636128
             NAM  36 evdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfy......kgrapkgektdWvmh 124
                     + ++y+++P +L    + +ek    + +   +++t + +     sgyWk    dk ++sk+g+++g kk + fy        r+ + +k +W+++
  Csa05g047220.1 121 TNNVYRLHPLTLV---DPSEKMFRLYGTCIYANETFRTTDECDGSGYWKILHGDKLIKSKSGKTIGFKKGFGFYqmeelsYVREGEDVKVTWTIK 212
                     4588999999995...2233333344444444444445555778******************************66554437888899******* PP

             NAM 125 eyrl 128
                     eyrl
  Csa05g047220.1 213 EYRL 216
                     **98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100517.742162IPR003441NAC domain
SuperFamilySSF1019412.35E-14261IPR003441NAC domain
SuperFamilySSF1019412.09E-2282231IPR003441NAC domain
PROSITE profilePS5100519.66886232IPR003441NAC domain
PfamPF023655.7E-5152216IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MGRDKLIKSE ETGEILGFKK IYKFCLKRQP EEYKRSWVME EYRLTNNLNR KQDHVICKIR  60
FLFRTEISFL LGKHFSYLST IPANLLLPSY GYYDSDSQVE DESYLLTISD SDGNVWPSYV  120
TNNVYRLHPL TLVDPSEKMF RLYGTCIYAN ETFRTTDECD GSGYWKILHG DKLIKSKSGK  180
TIGFKKGFGF YQMEELSYVR EGEDVKVTWT IKEYRLKEEE KQNKVLCVIK LTEL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g047220.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100854.11e-171PREDICTED: uncharacterized protein LOC104789347
TrEMBLO807521e-108O80752_ARATH; Apical meristem formation protein-related
STRINGXP_010473217.11e-141(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM37041459
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G60300.11e-102NAC family protein