PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g044630.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | YABBY | ||||||||
Protein Properties | Length: 165aa MW: 18394 Da PI: 9.9466 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 189.1 | 2.2e-58 | 5 | 153 | 4 | 170 |
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsvss 98 + ++eq+Cy+ CnfCn +lavsvP +slf +vtvrCGhCt+l svn+a a q l+ + + +++++ ++ ++++ +t+++s Csa05g044630.1 5 VMATEQLCYIPCNFCNIVLAVSVPCSSLFDIVTVRCGHCTNLWSVNMAAALQSLSRPNF-------------QATNNAVPEYGSSSRG-HTKIPS 85 6789*****************************************99988887776653.............3334444444333333.333333 PP YABBY 99 eklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 ++s+ ++ e v+r ekrqrvPsayn+fikeeiqrika+nPdishreafs+aaknWahfP+ihfgl Csa05g044630.1 86 -RISTRTKTEQ---RIVNRSTEKRQRVPSAYNQFIKEEIQRIKANNPDISHREAFSTAAKNWAHFPHIHFGL 153 .2333333333...3589****************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.8E-68 | 7 | 153 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 5.24E-8 | 90 | 146 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.7E-4 | 107 | 145 | IPR009071 | High mobility group box domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:1902183 | Biological Process | regulation of shoot apical meristem development | ||||
GO:2000024 | Biological Process | regulation of leaf development |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MANSVMATEQ LCYIPCNFCN IVLAVSVPCS SLFDIVTVRC GHCTNLWSVN MAAALQSLSR 60 PNFQATNNAV PEYGSSSRGH TKIPSRISTR TKTEQRIVNR STEKRQRVPS AYNQFIKEEI 120 QRIKANNPDI SHREAFSTAA KNWAHFPHIH FGLMLESNKQ AKLA* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Promotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g044630.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK119091 | 0.0 | AK119091.1 Arabidopsis thaliana At2g26580 mRNA for unknown protein, complete cds, clone: RAFL21-44-F19. | |||
GenBank | BT003734 | 0.0 | BT003734.1 Arabidopsis thaliana At2g26580 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510888.1 | 1e-121 | PREDICTED: axial regulator YABBY 5 | ||||
Swissprot | Q8GW46 | 1e-115 | YAB5_ARATH; Axial regulator YABBY 5 | ||||
TrEMBL | A0A178VPK4 | 1e-113 | A0A178VPK4_ARATH; YAB5 | ||||
STRING | XP_010510888.1 | 1e-120 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5538 | 26 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 1e-117 | YABBY family protein |
Publications ? help Back to Top | |||
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