PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g042120.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 290aa MW: 33252.8 Da PI: 7.6492

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g042120.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.9	2.5e-20	56	172	1	117
NAM 1 lppGfrFhPtdeelvveyLkkk...vegkk.leleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGf ++P+d e++ L++k + g++ + l + ++ v+iy+++P++L k+k+ +++ew+f sk++k + gk+++r k gyW+at + Csa05g042120.1 56 LPPGFNYRPNDLEVL-LLLCQKrdyLGGNRdF-LVDLpVHLVNIYESNPEQLTVKFKKgNDTEWFFISKKNKMGKGGKKQKRCDKGGYWHATVAS 148 79*********99.5566652423334433.335559999******965555267799999999999999*************** PP NAM 90 kevlskkgelvglkktLvfykgrapkge 117 +e+ + g k+ L +y g++p+g Csa05g042120.1 149 EEIDD----GQGSKTALSYYVGKQPNGD 172 88....469************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	4.05E-23	51	180	IPR003441	NAC domain
PROSITE profile	PS51005	20.767	56	209	IPR003441	NAC domain
Pfam	PF02365	8.9E-8	57	169	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MPMPGRNKRK ERSLPEPEPE PSGIPSSSAD DHHLSSSSSS ADHSLSSRPP STRPCLPPGF 60 NYRPNDLEVL LLLCQKRDYL GGNRDFLVDL PVHLVNIYES NPEQLTVKFK KGNDTEWFFI 120 SKKNKMGKGG KKQKRCDKGG YWHATVASEE IDDGQGSKTA LSYYVGKQPN GDYSLCKIYR 180 STQAIKEKNK AEEEENEQQQ PPTVKYHQQQ PLNSYQPQPQ PHHDIAYQQQ LLFQPAPLDS 240 YQPQSSDLAY QQQQQFWPGP LDSYRPHRWQ FSAARPDSHQ LQPYYDSTYQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g042120.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010513323.1	1e-170	PREDICTED: NAC domain-containing protein 19-like
TrEMBL	R0H259	3e-60	R0H259_9BRAS; Uncharacterized protein
STRING	XP_010513323.1	1e-169	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2793	15	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55210.1	4e-40	NAC domain containing protein 63