PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g042030.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

EIL

Protein Properties

Length: 396aa MW: 45646.6 Da PI: 5.5085

Description

EIL family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g042030.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	EIN3	159	5.7e-49	49	145	1	101
XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS EIN3 1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksnksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvegasdsLraWW 95 +el+krmw+d+m+lkrlke++ + + k+ ++ +k+++s+eqarrkkmsraQDgiLkYMlk+mevc+aqGfvYgiipekgkpv+gasd+Lr+WW Csa05g042030.1 49 DELEKRMWRDKMRLKRLKEQQSK-C--KDG-VDGSKQRQSQEQARRKKMSRAQDGILKYMLKMMEVCKAQGFVYGIIPEKGKPVTGASDNLREWW 139 79****************997.5..676.8999******************************************************** PP XXXXXX CS EIN3 96 kekvef 101 k+kv++ Csa05g042030.1 140 KDKVSE 145 **87 PP
2	EIN3	28	3.7e-09	186	246	294	354
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS EIN3 294 hvqavkttagfpvvrkrkkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354 ++v tt +++++rkrk +++ + +++++ + +tc++ q+++ +++l+f+d++s++++++ Csa05g042030.1 186 IKEEVATTGNLEFTRKRKPNNDMNVMIMDRPAGYTCENGQCPHGKMNLGFQDRSSRDNHQM 246 335566667*******999999999******************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04873	7.8E-45	49	149	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence Send to blast
MMMFNEMGMY GNMDFFPSST PLDVCPLPQA EQEPMVEDVD YTDDEMDVDE LEKRMWRDKM 60 RLKRLKEQQS KCKDGVDGSK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI 120 IPEKGKPVTG ASDNLREWWK DKVSEYDVEG FEKEQPNFDL EERKPEIVMM NPQTSFGVAK 180 MQHFPIKEEV ATTGNLEFTR KRKPNNDMNV MIMDRPAGYT CENGQCPHGK MNLGFQDRSS 240 RDNHQMVCPY RDNRVAYGAS KFHVGEMRPQ HSVQPIDLSG FGVPENGQKM ITELMAMYDR 300 NVQSSQTPPP LMGHQSMTLD AKPAQNQQLS FNSGNQMYMQ QGTNSGINNR FQMVFDSTPF 360 DMAAFDYRDD WHTGPVEGMG KQHQQQQQQD ASIWF*

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence Send to blast

MMMFNEMGMY GNMDFFPSST PLDVCPLPQA EQEPMVEDVD YTDDEMDVDE LEKRMWRDKM  60
RLKRLKEQQS KCKDGVDGSK QRQSQEQARR KKMSRAQDGI LKYMLKMMEV CKAQGFVYGI  120
IPEKGKPVTG ASDNLREWWK DKVSEYDVEG FEKEQPNFDL EERKPEIVMM NPQTSFGVAK  180
MQHFPIKEEV ATTGNLEFTR KRKPNNDMNV MIMDRPAGYT CENGQCPHGK MNLGFQDRSS  240
RDNHQMVCPY RDNRVAYGAS KFHVGEMRPQ HSVQPIDLSG FGVPENGQKM ITELMAMYDR  300
NVQSSQTPPP LMGHQSMTLD AKPAQNQQLS FNSGNQMYMQ QGTNSGINNR FQMVFDSTPF  360
DMAAFDYRDD WHTGPVEGMG KQHQQQQQQD ASIWF*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor acting as a positive regulator in the ethylene response pathway. Could bind the primary ethylene response element present in the ETHYLENE-RESPONSE-FACTOR1 promoter. {ECO:0000269\|PubMed:9215635, ECO:0000269\|PubMed:9851977}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g042030.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC005623	0.0	AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBank	AF004213	0.0	AF004213.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) mRNA, complete cds.
GenBank	AY065191	0.0	AY065191.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050; T20P8.10) mRNA, complete cds.
GenBank	BT003344	0.0	BT003344.1 Arabidopsis thaliana ethylene-insensitive3-like1 (EIL1) (At2g27050) mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510821.1	1e-179	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Refseq	XP_010510822.1	1e-179	PREDICTED: ETHYLENE INSENSITIVE 3-like 1 protein
Swissprot	Q9SLH0	1e-149	EIL1_ARATH; ETHYLENE INSENSITIVE 3-like 1 protein
TrEMBL	D7LFJ4	1e-151	D7LFJ4_ARALL; Uncharacterized protein
STRING	XP_010510821.1	1e-178	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18735	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27050.1	1e-150	ETHYLENE-INSENSITIVE3-like 1

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Kim HG, et al. GDSL LIPASE1 modulates plant immunity through feedback regulation of ethylene signaling. Plant Physiol., 2013. 163(4): p. 1776-91 [PMID:24170202] Zhang GB,Yi HY,Gong JM The Arabidopsis ethylene/jasmonic acid-NRT signaling module coordinates nitrate reallocation and the trade-off between growth and environmental adaptation. Plant Cell, 2014. 26(10): p. 3984-98 [PMID:25326291] Wang J, et al. Arabidopsis ROOT HAIR DEFECTIVE3 is involved in nitrogen starvation-induced anthocyanin accumulation. J Integr Plant Biol, 2015. 57(8): p. 708-21 [PMID:25494721] Qing D, et al. Quantitative and Functional Phosphoproteomic Analysis Reveals that Ethylene Regulates Water Transport via the C-Terminal Phosphorylation of Aquaporin PIP2;1 in Arabidopsis. Mol Plant, 2016. 9(1): p. 158-174 [PMID:26476206] Poulios S,Vlachonasios KE Synergistic action of histone acetyltransferase GCN5 and receptor CLAVATA1 negatively affects ethylene responses in Arabidopsis thaliana. J. Exp. Bot., 2016. 67(3): p. 905-18 [PMID:26596766] Shen X,Li Y,Pan Y,Zhong S Activation of HLS1 by Mechanical Stress via Ethylene-Stabilized EIN3 Is Crucial for Seedling Soil Emergence. Front Plant Sci, 2016. 7: p. 1571 [PMID:27822221] Abozeid A, et al. Ethylene Improves Root System Development under Cadmium Stress by Modulating Superoxide Anion Concentration in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 253 [PMID:28286514] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944] Harkey AF, et al. Identification of Transcriptional and Receptor Networks That Control Root Responses to Ethylene. Plant Physiol., 2018. 176(3): p. 2095-2118 [PMID:29259106]