PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g041940.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family FAR1
Protein Properties Length: 520aa    MW: 58846.1 Da    PI: 5.9856
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g041940.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR137.67e-1246117190
            FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                     +fY+eY++++GF+ +       +++g++  r+fvCs + ++++  +              +C+a+++++++ ++kw+v+k+++eH+H la
  Csa05g041940.1  46 SFYDEYSRQLGFTSKSLP----RTDGSVSVREFVCSTKRSKRRLAE--------------SCDAMVRIEMKGQDKWVVAKFVKEHTHGLA 117
                     5***********876654....55899********98877666555..............5**************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.3E-747117IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.398324360IPR007527Zinc finger, SWIM-type
PfamPF044343.2E-9329358IPR007527Zinc finger, SWIM-type
SMARTSM005753.7E-8335362IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MGNHEMGDDG DAEPNNIENS LGVQDEIGIA EPCVGMEFSS EKEAKSFYDE YSRQLGFTSK  60
SLPRTDGSVS VREFVCSTKR SKRRLAESCD AMVRIEMKGQ DKWVVAKFVK EHTHGLASPN  120
TLHCLRPRSR HFANSEKSSY QEGVNNVPSG MIFQVELYNC INFTETIEEF ESSWSSIIEK  180
YDLGRHEWLN SLYNARAQWV PVYFRDSFFA AVFPSQGYYT GSFFDGYVNQ QTTLPMFFRL  240
YERAMESWFE MEIEADLDTV NTPPVLKTPS PMENQAANLF TRKIFGKFQE ELVETFAHTA  300
NRIEDDGTTS TFRVAKFEDD NKAYIVTFCY PEMRANCSCQ MFEHCGILCR HVLTVFTVTN  360
IPTLPPHYIL RRWTRNAKSM GELDEHVSEN GHDSLIHRYN HLCREAIKYA EEGAVTAEAY  420
NIALGALREG GKKVSVVRKN IGRAIPPSAH GSGGKTSLSA ADTTPLLWPR QDEMIRRFNL  480
NDGGARAQSV ADLNLPRMAL HRDDGAPENM VPRVNLSQT*
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g041940.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0056230.0AC005623.3 Arabidopsis thaliana chromosome 2 clone T20P8 map B68, complete sequence.
GenBankCP0026850.0CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010513318.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 3-like
SwissprotQ9ZVC90.0FRS3_ARATH; Protein FAR1-RELATED SEQUENCE 3
TrEMBLA0A3N6S4360.0A0A3N6S436_BRACR; Uncharacterized protein
STRINGXP_010513318.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM11826253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.20.0FAR1-related sequence 3
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]