PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g041670.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

NAC

Protein Properties

Length: 341aa MW: 38548.3 Da PI: 6.4131

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g041670.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	157.4	5.8e-49	14	140	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 l pGfrF+Ptd el+++yL++k++g+++++ vi+ev+iyk+ePwdLp ++ ++e+ew++F+ r +ky++g++++rat+ gyWkatgk+++v+s Csa05g041670.1 14 LFPGFRFSPTDVELISYYLRRKIDGDEHSV-AVIAEVEIYKFEPWDLPeESKLKSENEWFYFCARGRKYPHGSQSRRATQLGYWKATGKERSVKS 107 579**********************999.89***********433334678********************************** PP NAM 95 kkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++vg+k+tLvf+ grap+ge+t+W+mhey + Csa05g041670.1 108 -GNQVVGTKRTLVFHIGRAPRGERTEWIMHEYCI 140 .999**************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-54	6	155	IPR003441	NAC domain
PROSITE profile	PS51005	52.545	14	156	IPR003441	NAC domain
Pfam	PF02365	2.7E-24	16	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 341 aa Download sequence Send to blast
MSKEAEMSIA VSALFPGFRF SPTDVELISY YLRRKIDGDE HSVAVIAEVE IYKFEPWDLP 60 EESKLKSENE WFYFCARGRK YPHGSQSRRA TQLGYWKATG KERSVKSGNQ VVGTKRTLVF 120 HIGRAPRGER TEWIMHEYCI HGASQDALVV CRLRKNADFR ASSSQKHIED GVAQDDGYAG 180 QSGGSEKEEK SYSVYDSELQ LSNGDIAESS NVVEDQAEIV DDCYAEILND DIIKLDEEAM 240 KASQASRPTN PTQQETIFSE ASSKRSKCGI KKESKETMNC YALFRIKNVP GTELSWRFPN 300 PFHIKKDDSQ RLMKNVLATT VFLAILVSFF WTILIARNSS *

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-43	13	166	16	171	NO APICAL MERISTEM PROTEIN
3swm_A	9e-44	13	166	19	174	NAC domain-containing protein 19
3swm_B	9e-44	13	166	19	174	NAC domain-containing protein 19
3swm_C	9e-44	13	166	19	174	NAC domain-containing protein 19
3swm_D	9e-44	13	166	19	174	NAC domain-containing protein 19
3swp_A	9e-44	13	166	19	174	NAC domain-containing protein 19
3swp_B	9e-44	13	166	19	174	NAC domain-containing protein 19
3swp_C	9e-44	13	166	19	174	NAC domain-containing protein 19
3swp_D	9e-44	13	166	19	174	NAC domain-containing protein 19
4dul_A	1e-43	13	166	16	171	NAC domain-containing protein 19
4dul_B	1e-43	13	166	16	171	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP), probably via metalloprotease activity. Regulates gibberellic acid-mediated salt-responsive repression of seed germination and flowering via FT, thus delaying seed germination under high salinity conditions. {ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g041670.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By high salt stress (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Repressed by gibberellic acid (GA), but induced by the GA biosynthetic inhibitor paclabutrazol (PAC) (PubMed:18363782). Accumulates transiently in seeds upon imbibition (PubMed:19704545, PubMed:17410378, PubMed:18363782, PubMed:19704528). Induced by drought stress (PubMed:17158162). {ECO:0000269\|PubMed:17158162, ECO:0000269\|PubMed:17410378, ECO:0000269\|PubMed:18363782, ECO:0000269\|PubMed:19704528, ECO:0000269\|PubMed:19704545}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT028934	0.0	BT028934.1 Arabidopsis thaliana At2g27300 mRNA, complete cds.
GenBank	DQ056544	0.0	DQ056544.1 Arabidopsis thaliana no apical meristem family protein (At2g27300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510787.1	0.0	PREDICTED: NAC domain-containing protein 40-like
Swissprot	Q9XIN7	0.0	NAC40_ARATH; NAC domain-containing protein 40
TrEMBL	R0HQ77	0.0	R0HQ77_9BRAS; Uncharacterized protein
STRING	XP_010510787.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10453	25	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G27300.1	0.0	NTM1-like 8

Publications ? help Back to Top
Liang M, et al. Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana. Traffic, 2015. 16(10): p. 1062-74 [PMID:26201836] Tian H, et al. NTL8 Regulates Trichome Formation in Arabidopsis by Directly Activating R3 MYB Genes TRY and TCL1. Plant Physiol., 2017. 174(4): p. 2363-2375 [PMID:28649093]