PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g035690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 308aa MW: 35347.1 Da PI: 5.1202 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 27.4 | 4.2e-09 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 +i nk r+ tf +R++g KK + L +LC+++v+ +i+ + Csa05g035690.1 10 FIPNKVIRKRTFNRRKEGFKKKLNDLKTLCNVDVCAVIYNP 50 799*********************************99965 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.087 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.9E-10 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.02E-17 | 1 | 77 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.55E-21 | 2 | 78 | No hit | No description |
Pfam | PF00319 | 1.0E-11 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 308 aa Download sequence Send to blast |
MAKKKLNLTF IPNKVIRKRT FNRRKEGFKK KLNDLKTLCN VDVCAVIYNP FNSTPDAWPS 60 ESGVNSVIEK ALMVTEKKCE VLNHEKFLNQ YIEKVRKHED KLVEDNKEIR LKEAMFKCLG 120 GNMKDFQMND KDRSDLCEFL DGYLKDLYHH KKVNLNQPTF EIGESSSMQM ARTATTANMA 180 DADMAPTDVS PFMAPPSMAE VGFSSFLNAL FFNYPQPTNE FELIVSPNQT LGDMNFLSMT 240 LSNHGADHVD FQISDNNQEV YIPSVDQDEI HYPNQTYDGN QQGFIEEMIK YAEETNFPWI 300 VDNPNKF* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g035690.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010513274.1 | 0.0 | PREDICTED: LOW QUALITY PROTEIN: agamous-like MADS-box protein AGL80 | ||||
TrEMBL | A0A178VYD3 | 1e-117 | A0A178VYD3_ARATH; AGL46 | ||||
TrEMBL | F4IIT6 | 1e-117 | F4IIT6_ARATH; AGAMOUS-like 46 | ||||
TrEMBL | Q7XJ97 | 1e-117 | Q7XJ97_ARATH; Uncharacterized protein | ||||
STRING | XP_010513274.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28700.1 | 1e-114 | AGAMOUS-like 46 |