PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g033500.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family WRKY
Protein Properties Length: 470aa    MW: 53080.6 Da    PI: 9.665
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g033500.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.7e-30242299260
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                     +Dgy WrKYGqK+vk+se+prsY++Ct+++C +kk ve+++ d++++ei+Y+g Hnh+k
  Csa05g033500.1 242 NDGYGWRKYGQKQVKKSENPRSYFKCTYPNCVSKKIVETAS-DGQITEIIYKGGHNHPK 299
                     8***************************************9.***************85 PP
2WRKY101.55e-32404461259
                     --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
            WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                      Dg++WrKYGqK+vkg+++prsYY+Ct++gC v+k+versa d ++v +tYeg+Hnh+
  Csa05g033500.1 404 VDGFRWRKYGQKVVKGNTNPRSYYKCTYQGCGVRKQVERSAADDRAVLTTYEGRHNHD 461
                     5********************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.7E-25229300IPR003657WRKY domain
SuperFamilySSF1182906.02E-23238300IPR003657WRKY domain
SMARTSM007741.3E-30241299IPR003657WRKY domain
PfamPF031062.2E-22242298IPR003657WRKY domain
PROSITE profilePS5081120.461242300IPR003657WRKY domain
Gene3DG3DSA:2.20.25.809.2E-34388463IPR003657WRKY domain
SuperFamilySSF1182905.36E-28395463IPR003657WRKY domain
PROSITE profilePS5081134.176398463IPR003657WRKY domain
SMARTSM007746.4E-37403462IPR003657WRKY domain
PfamPF031065.2E-25405461IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 470 aa     Download sequence    Send to blast
MKFLGQVEKD KKRKRERKQK KTLLDTPPSS SLTQSKILNS ISFHLRDHFI KIKKKFPFLA  60
NPLFLKALKL SPLIKTIMSS TSFTDLLASS GVDCYEDDED LRVPGSSFGG YYPERTGSGL  120
PKFKTAQPPP LPISPSSHNF TFSDFLDSPL LLSSSHSLIS PTTGAFPFQG SNNLSEFPWQ  180
LQPQPQPSNA SSALQETYGV QDHHQKKQEL IPREIAIQNN NQSFGSDRQV KVPSYMVSRN  240
SNDGYGWRKY GQKQVKKSEN PRSYFKCTYP NCVSKKIVET ASDGQITEII YKGGHNHPKP  300
EFTKRPSQSS LPSSVNGRRL FNPASVVSEP HDQSENSSIS FDYSDLEQKS FKSEYGEIED  360
EDEQLDIKRM KREGEDEGMS IEVSRGVKEP RVVVQTISDI DILVDGFRWR KYGQKVVKGN  420
TNPRSYYKCT YQGCGVRKQV ERSAADDRAV LTTYEGRHNH DIPTALRRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A5e-32394463877Probable WRKY transcription factor 4
2lex_A5e-32394463877Probable WRKY transcription factor 4
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Functions with WRKY33 as positive regulator of salt stress response and abscisic acid (ABA) signaling (PubMed:18839316). Plays a partial role in heat stress tolerance (PubMed:19125253). Functions with WRKY26 and WRKY33 as positive regulator of plant thermotolerance by partially participating in ethylene-response signal transduction pathway (PubMed:21336597). {ECO:0000250|UniProtKB:Q9SI37, ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253, ECO:0000269|PubMed:21336597}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g033500.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress (PubMed:18839316). Induced by heat stress (PubMed:19125253). {ECO:0000269|PubMed:18839316, ECO:0000269|PubMed:19125253}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0627200.0AY062720.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250; T9D9.6) mRNA, complete cds.
GenBankAY1363180.0AY136318.1 Arabidopsis thaliana putative WRKY-type DNA binding protein (At2g30250) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010510388.10.0PREDICTED: probable WRKY transcription factor 25
SwissprotO229210.0WRK25_ARATH; Probable WRKY transcription factor 25
TrEMBLR0HWQ30.0R0HWQ3_9BRAS; Uncharacterized protein
STRINGXP_010510388.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM116031733
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30250.10.0WRKY DNA-binding protein 25
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]