PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g033380.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

LBD

Protein Properties

Length: 267aa MW: 28833.4 Da PI: 8.1412

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g033380.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	125.8	2.1e-39	49	147	1	99
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaela 95 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+k+l ++ e++r da++slvyeA+ r+rdP+yG++g i++lq+++++l++el Csa05g033380.1 49 PCAACKLLRRRCAEECPFSPYFSPHEPQKFAAVHKVFGASNVSKMLLEVGESQRGDAANSLVYEANLRLRDPIYGCMGAISALQHHIQSLQTELT 143 7*********************************************************************************************9 PP DUF260 96 llke 99 ++++ Csa05g033380.1 144 TVRT 147 9886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	24.944	48	149	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.9E-40	49	146	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
EEFGEYYEIV KKIKKDPTYA TTTDHHAVMG IRRHVAAVPP GTTLNTVTPC AACKLLRRRC 60 AEECPFSPYF SPHEPQKFAA VHKVFGASNV SKMLLEVGES QRGDAANSLV YEANLRLRDP 120 IYGCMGAISA LQHHIQSLQT ELTTVRTDIL RYKYREATTI TSLQNNNFNN NTTTSSVSCD 180 HHALASAILL SPPPPPPPPP RPPRLLSSQP APPPTPPGSL PSPSMVVSSS SSSNSSATNS 240 MYNPPPSSAA GYSNSLSSDN NVHYFD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	7e-42	42	160	4	122	LOB family transfactor Ramosa2.1
5ly0_B	7e-42	42	160	4	122	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g033380.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB473843	0.0	AB473843.1 Arabidopsis thaliana ASL10 mRNA for ASYMMETRIC LEAVES2-like 10 protein, complete cds.
GenBank	AF447888	0.0	AF447888.1 Arabidopsis thaliana LOB DOMAIN 13 (LBD13) mRNA, complete cds.
GenBank	BT026052	0.0	BT026052.1 Arabidopsis thaliana At2g30340 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510376.1	0.0	PREDICTED: LOB domain-containing protein 13-like
Swissprot	Q9AT61	1e-131	LBD13_ARATH; LOB domain-containing protein 13
TrEMBL	A0A178VTE1	1e-129	A0A178VTE1_ARATH; LBD13
STRING	XP_010510376.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1927	27	81

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30340.1	1e-105	LOB domain-containing protein 13

Publications ? help Back to Top
Cho C,Jeon E,Pandey SK,Ha SH,Kim J LBD13 positively regulates lateral root formation in Arabidopsis. Planta, 2019. 249(4): p. 1251-1258 [PMID:30627888]