PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g030080.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 475aa MW: 53604.9 Da PI: 5.7458

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g030080.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.2	2.6e-12	271	312	8	54
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 Er RR + N++f+ L++l+P++ +K + a+i+ +A++YIk+L Csa05g030080.1 271 TERERRVHFNDRFQDLKSLIPNP-----TKIDRASIVGEAIDYIKEL 312 7********************.....9**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.280.10	1.7E-13	260	323	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.73E-14	261	325	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.06E-11	261	317	No hit	No description
PROSITE profile	PS50888	15.402	263	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	9.5E-10	269	312	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.8E-10	269	318	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MEEKKGNLYE EMGCFDPNTP PAEVTVETSF SQAEQPPPPP QQQPPQILVA GSTSNSNCSV 60 EVEDLSEFHL SPQDCPQTAS TPLQFHINPP PTPCDQFHNN MIHQMATHHQ QQQSDWDQHN 120 GYQDFVNMVP NSATTPDLLS LLHLPRCSLP PPPLHHHHHP SSMLPNSFSD IMSSSSAAAV 180 MYDPLFHLNF PMQPRDQNHL RNGSSCLLGV EDQIQMDANG GVNMMYFEGG HNNNNNDNNG 240 DGFDNGVLEF NTTGAVTRKG RRSQKSNTSP TERERRVHFN DRFQDLKSLI PNPTKIDRAS 300 IVGEAIDYIK ELLRTIEEFK MLVEKKRFGR FRSKKKARVG EDEQEEEEDT VNYKPQSEVD 360 QSCFNKNNNN SLRCSWLKRK SKVTEVDVRI IDDEVTIKLV QKKKINCLLF TTKVLDQLHL 420 DLHHVAGGQI GEHYSFLFNT KICEGSCVYA SGIADTVMEV VEKQYMEAVP SNGY*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MEEKKGNLYE EMGCFDPNTP PAEVTVETSF SQAEQPPPPP QQQPPQILVA GSTSNSNCSV  60
EVEDLSEFHL SPQDCPQTAS TPLQFHINPP PTPCDQFHNN MIHQMATHHQ QQQSDWDQHN  120
GYQDFVNMVP NSATTPDLLS LLHLPRCSLP PPPLHHHHHP SSMLPNSFSD IMSSSSAAAV  180
MYDPLFHLNF PMQPRDQNHL RNGSSCLLGV EDQIQMDANG GVNMMYFEGG HNNNNNDNNG  240
DGFDNGVLEF NTTGAVTRKG RRSQKSNTSP TERERRVHFN DRFQDLKSLI PNPTKIDRAS  300
IVGEAIDYIK ELLRTIEEFK MLVEKKRFGR FRSKKKARVG EDEQEEEEDT VNYKPQSEVD  360
QSCFNKNNNN SLRCSWLKRK SKVTEVDVRI IDDEVTIKLV QKKKINCLLF TTKVLDQLHL  420
DLHHVAGGQI GEHYSFLFNT KICEGSCVYA SGIADTVMEV VEKQYMEAVP SNGY*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g030080.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By UV treatment. {ECO:0000269\|PubMed:12679534}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010510222.1	0.0	PREDICTED: transcription factor bHLH10-like
Refseq	XP_019101386.1	0.0	PREDICTED: transcription factor bHLH10-like
Swissprot	Q84TK1	0.0	BH010_ARATH; Transcription factor bHLH10
TrEMBL	R0HNY7	0.0	R0HNY7_9BRAS; Uncharacterized protein (Fragment)
STRING	XP_010510222.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1355	26	96

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G31220.1	0.0	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Cui J, et al. Feedback Regulation of DYT1 by Interactions with Downstream bHLH Factors Promotes DYT1 Nuclear Localization and Anther Development. Plant Cell, 2016. 28(5): p. 1078-93 [PMID:27113773] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]