PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g030070.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | ERF | ||||||||
Protein Properties | Length: 161aa MW: 18607.4 Da PI: 4.2299 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 54.5 | 2.9e-17 | 87 | 132 | 3 | 51 |
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51 y+GVr ++ +g+++AeIrd + ng r++lg+f+ aeeAa a+++a+ Csa05g030070.1 87 YRGVRKRP-WGKFAAEIRDSTRNG--IRVWLGTFDKAEEAALAYDQAAF 132 9*******.**********44465..*********************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51032 | 21.522 | 86 | 144 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 8.5E-22 | 86 | 146 | IPR016177 | DNA-binding domain |
Gene3D | G3DSA:3.30.730.10 | 5.2E-29 | 86 | 145 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 3.0E-34 | 86 | 150 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 3.0E-11 | 87 | 132 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 2.2E-10 | 87 | 98 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 9.61E-27 | 87 | 145 | No hit | No description |
PRINTS | PR00367 | 2.2E-10 | 110 | 126 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
MEYSQSPMYS SPSSWSSSQE SLLWNESCFF DQSSDPQSFL YPSYDYSDDF FSFESSEMMV 60 KEEIQNSEVS NSEEEEKVGI DEEERTYRGV RKRPWGKFAA EIRDSTRNGI RVWLGTFDKA 120 EEAALAYDQA AFVTKGSLAT LNFPVEVVRE SLKKMENRRW * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 3e-27 | 85 | 147 | 4 | 66 | ATERF1 |
3gcc_A | 3e-27 | 85 | 147 | 4 | 66 | ATERF1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May act as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:11950980}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g030070.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Weakly induced by Pseudomonas syringae tomato (avirulent avrRpt2 strain), but also by mock inoculation. {ECO:0000269|PubMed:11950980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC006593 | 1e-156 | AC006593.5 Arabidopsis thaliana chromosome 2 clone F16D14 map nga361, complete sequence. | |||
GenBank | AY070443 | 1e-156 | AY070443.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds. | |||
GenBank | AY096563 | 1e-156 | AY096563.1 Arabidopsis thaliana putative ethylene reponse factor AP2 domain transcription factor (At2g31230) mRNA, complete cds. | |||
GenBank | CP002685 | 1e-156 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010510221.1 | 1e-112 | PREDICTED: ethylene-responsive transcription factor 15-like | ||||
Swissprot | Q8VYM0 | 2e-86 | ERF93_ARATH; Ethylene-responsive transcription factor 15 | ||||
TrEMBL | A0A178VV98 | 5e-84 | A0A178VV98_ARATH; ERF15 | ||||
STRING | XP_010510221.1 | 1e-112 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3990 | 18 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G31230.1 | 7e-44 | ethylene-responsive element binding factor 15 |
Publications ? help Back to Top | |||
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