PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g022930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 257aa MW: 29296.2 Da PI: 9.1075 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 146.6 | 1.3e-45 | 15 | 130 | 1 | 121 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp ++e yfFs+++ ky++g+r+nr+t sgyWkatg dk++ + Csa05g022930.1 15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTKEAKYPNGNRSNRSTGSGYWKATGIDKQIGK- 104 79****************************.99***************44...47899**********************************99. PP NAM 96 kgelvglkktLvfykgrapkgektdW 121 k+ +vg+kktLvfykg+ p+g++t+W Csa05g022930.1 105 KTLAVGMKKTLVFYKGKPPNGTRTNW 130 8999********************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-52 | 10 | 144 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 44.749 | 15 | 185 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.9E-23 | 16 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 257 aa Download sequence Send to blast |
MEKRSSTKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL 60 PGDCDSERYF FSTKEAKYPN GNRSNRSTGS GYWKATGIDK QIGKKTLAVG MKKTLVFYKG 120 KPPNGTRTNW GQNMNWVLCR VFLKKRSNSN KRKEEERDEL ENEKETEKES EEEKKKSSTC 180 PIFYDFMRKD KKNKIRRRRC CDLNLTPATS CCCCCFCSSS SGSSSSVCSS ALTQTSSNDS 240 YHEEISCQEN KFCLFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-45 | 13 | 151 | 15 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swm_B | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swm_C | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swm_D | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_A | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_B | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_C | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
3swp_D | 4e-45 | 13 | 151 | 18 | 174 | NAC domain-containing protein 19 |
4dul_A | 4e-45 | 13 | 151 | 15 | 171 | NAC domain-containing protein 19 |
4dul_B | 4e-45 | 13 | 151 | 15 | 171 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g022930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325080 | 1e-147 | AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds. | |||
GenBank | AF410299 | 1e-147 | AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds. | |||
GenBank | AY093730 | 1e-147 | AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469465.1 | 1e-147 | PREDICTED: NAC domain-containing protein 41-like | ||||
Swissprot | O22798 | 1e-119 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | R0HQU6 | 1e-124 | R0HQU6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010469465.1 | 1e-147 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-118 | NAC domain containing protein 41 |
Publications ? help Back to Top | |||
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