PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g020540.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family NF-YA
Protein Properties Length: 145aa    MW: 15837.8 Da    PI: 6.5006
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g020540.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA41.83.6e-1373973458
       CBFB_NFYA 34 srkpylheSRhkhAlrRpRgsgGrF 58
                    +  py+heSRh hA+rRpRg+gGrF
  Csa05g020540.1 73 EEPPYMHESRHLHAIRRPRGCGGRF 97
                    5669********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.7E-438100IPR001289Nuclear transcription factor Y subunit A
PfamPF020454.0E-107497IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115215.47776100IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 145 aa     Download sequence    Send to blast
MSSELQFPTH CPVAPRCCFA EFSTWALSVS RSLLQKRLCT ATVSSTSLSW AGVQLQLMGM  60
QQPGVPLQCD AVEEPPYMHE SRHLHAIRRP RGCGGRFLNA KKKNGEQKEE EEEEESSDEN  120
TSEASSSLRS EKLAIAASAP NGRS*
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g020540.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0030962e-64AC003096.3 Arabidopsis thaliana chromosome 2 clone T29F13 map ve016, complete sequence.
GenBankAY0724142e-64AY072414.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
GenBankAY1147112e-64AY114711.1 Arabidopsis thaliana putative CCAAT-binding transcription factor subunit (At2g34720) mRNA, complete cds.
GenBankCP0026852e-64CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019100780.11e-53PREDICTED: nuclear transcription factor Y subunit A-4-like
SwissprotQ8VY648e-49NFYA4_ARATH; Nuclear transcription factor Y subunit A-4
TrEMBLA0A178VWS52e-46A0A178VWS5_ARATH; NF-YA4
STRINGXP_010513053.12e-53(Camelina sativa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34720.11e-37nuclear factor Y, subunit A4
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]