PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g018490.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 446aa MW: 50970.4 Da PI: 5.0912 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.6 | 1.6e-29 | 42 | 171 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvvey..Lkkkvegkkleleev.ikevdiykvePwdLpkkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkev 92 ppGf ++P+d e+++ ++ + g++ l++ i+ v+iy+++P++L +k+k+ ++++w+f skr+k + gkr++r+ k gyW+++ +k++ Csa05g018490.1 42 PPGFNYRPNDLEVISLLgrIQDYLGGNRDLLATLsIHIVNIYESNPEQLSEKFKKgNDTDWFFISKRNKMGKGGKRQKRVDKGGYWHSKVASKKI 136 9*************443213344555553333445**************966655266799999999999999********************** PP NAM 93 lskkgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ lvg k+ L +y g++p+g+kt+W+mhey + Csa05g018490.1 137 DA-GQGLVGYKTALSYYVGKQPRGVKTSWLMHEYWI 171 99.999****************************75 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.32E-36 | 35 | 193 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 35.909 | 41 | 193 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.4E-14 | 42 | 169 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 446 aa Download sequence Send to blast |
MSMPGRNKRK ERSLPEPEPS EIPSSSADHH LSSSPSTRPC FPPGFNYRPN DLEVISLLGR 60 IQDYLGGNRD LLATLSIHIV NIYESNPEQL SEKFKKGNDT DWFFISKRNK MGKGGKRQKR 120 VDKGGYWHSK VASKKIDAGQ GLVGYKTALS YYVGKQPRGV KTSWLMHEYW IDQCPPSADE 180 DVKDYSLCKI YHSTQAINKK KKEEEEENEE QQPPTVEYHQ PQQFPHAPLD SYQPQPHHDI 240 AYQQQLLFQP APLDSYQPQP RDLAYQQQQQ QFWPGPLDSY RPHQWSGPLD SHQLQPYYDS 300 AYQQLLRTLE GENGGVQQQQ PSLPPPPPQG QDSRSGMVMT QEDVLDTSKD DDLFDMIDAW 360 LKNVEEQQHG VDTQQQQQEQ STQILPPPPP PQGQDSMFGN VMTDQDSDAI LFSNVEEHGV 420 ITQQQQQQQR ESSILYSSDR NPLMI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 7e-19 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 7e-19 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 7e-19 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 7e-19 | 33 | 199 | 9 | 171 | NO APICAL MERISTEM PROTEIN |
3swm_A | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_B | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_C | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swm_D | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_A | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_B | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_C | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
3swp_D | 7e-19 | 33 | 199 | 12 | 174 | NAC domain-containing protein 19 |
4dul_A | 7e-19 | 33 | 199 | 9 | 171 | NAC domain-containing protein 19 |
4dul_B | 7e-19 | 33 | 199 | 9 | 171 | NAC domain-containing protein 19 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g018490.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010431419.1 | 0.0 | PREDICTED: NAC domain-containing protein 53-like | ||||
TrEMBL | R0H259 | 2e-93 | R0H259_9BRAS; Uncharacterized protein | ||||
STRING | XP_010513033.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2793 | 15 | 63 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G55210.1 | 1e-66 | NAC domain containing protein 63 |