PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g015940.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 303aa MW: 34319.4 Da PI: 7.7768 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 39 | 61 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C + F++ L H+++H Csa05g015940.1 39 YTCSFCRREFRSAQALGGHMNVH 61 9********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 2.85E-6 | 36 | 65 | No hit | No description |
PROSITE profile | PS50157 | 11.219 | 39 | 66 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 2.0E-5 | 39 | 62 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0061 | 39 | 61 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 41 | 61 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 303 aa Download sequence Send to blast |
MEKPDDFWIP KKSNKESSWE ELAFAEDDAA GSLWPPRSYT CSFCRREFRS AQALGGHMNV 60 HRRDRARLKQ ADDQYLFSKS SSPPEYPSHN DSDDIRETSC YTLVFNSKPN YFKTQHSCVI 120 DLSSSSSLPY LTPRVSSGLP EKQNTSSSSP SFVVEPSKNS KKIPSSPWPC PSTFVEQKRC 180 DLYEIPVMEG DKKRKIESDM PRNEHKAKLG LGNSTDLSVS MNLVIHQSFP ITAHGSDDEI 240 ERGDICKRRR RHESPSQPSI FISSLSCKSD IITRKEEIKH KGDRFQELDL ELRLGTDPPK 300 GN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 2e-13 | 34 | 61 | 2 | 29 | superman protein |
2l1o_A | 2e-13 | 34 | 61 | 2 | 29 | Transcriptional regulator SUPERMAN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may regulate cell division and growth. {ECO:0000269|PubMed:12154136}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g015940.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509282.1 | 0.0 | PREDICTED: uncharacterized protein LOC104785713 | ||||
Swissprot | O80942 | 1e-176 | ZFP10_ARATH; Zinc finger protein 10 | ||||
TrEMBL | A0A178VU74 | 1e-173 | A0A178VU74_ARATH; ZFP10 | ||||
STRING | XP_010509282.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11047 | 25 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37740.1 | 1e-165 | zinc-finger protein 10 |