PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g015120.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 263aa    MW: 29486.7 Da    PI: 8.1358
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g015120.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.5e-1872130155
             AP2   1 sgykGVrwdkkrgrWvAeIrdpse.ng....krkrfslgkfgtaeeAakaaiaarkkleg 55 
                     ++++GVr++  +g+WvAeIr+p++ +g    ++kr +lg+f ta eAa a+++a+  ++g
  Csa05g015120.1  72 CRFRGVRQRV-WGKWVAEIREPVNhRGanstRSKRLWLGTFATAAEAALAYDRAASVMYG 130
                     689*****99.**********999977877666*********************987776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1372130IPR001471AP2/ERF domain
CDDcd000183.12E-2072139No hitNo description
Gene3DG3DSA:3.30.730.109.1E-2773139IPR001471AP2/ERF domain
SuperFamilySSF541719.81E-1973139IPR016177DNA-binding domain
PROSITE profilePS5103221.6873138IPR001471AP2/ERF domain
SMARTSM003801.1E-3073144IPR001471AP2/ERF domain
PRINTSPR003673.6E-97485IPR001471AP2/ERF domain
PRINTSPR003673.6E-9104120IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MEKEESGSKQ RSSASVGSSR RRRRAVEPVE ATLQRWGKEE DGEGLERVRR VQAKGSKKGC  60
MRGKGGLENP VCRFRGVRQR VWGKWVAEIR EPVNHRGANS TRSKRLWLGT FATAAEAALA  120
YDRAASVMYG RYARLNFPEG LLENEPGGEI KKNNETGSSG SYWFEPDNVS EPRDGVIETK  180
DGKDYLLYNN SIELGQDKIE NLDLTDTKMV ESMVYKNPAV KAEEGYSFDR FELDSGLLYN  240
EPGGSSYYQG GGSDSYLEFF RF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-1574138663ATERF1
3gcc_A4e-1574138663ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates abscisic acid-inducible transcription. Involved in the regulation of plant development and tolerance to abiotic stresses (PubMed:21069430). {ECO:0000269|PubMed:11798174, ECO:0000269|PubMed:21069430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g015120.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) treatment (PubMed:11798174). Induced by salt, heat and drought stresses. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010509186.10.0PREDICTED: dehydration-responsive element-binding protein 2E-like
SwissprotO809171e-108DRE2E_ARATH; Dehydration-responsive element-binding protein 2E
TrEMBLR0FYX81e-155R0FYX8_9BRAS; Uncharacterized protein
STRINGXP_010509186.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM142491823
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38340.15e-87ERF family protein
Publications ? help Back to Top
  1. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]