PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g012420.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family ERF
Protein Properties Length: 344aa    MW: 38555.2 Da    PI: 4.6979
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g012420.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.82.3e-1773123256
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                      y+GVr++  +g+WvAeIr+p   gk  r +lg+f t  eAa a+++a+k+++g+
  Csa05g012420.1  73 EYRGVRQRT-WGKWVAEIREP---GKGGRLWLGTFSTSHEAALAYDEAAKAMYGH 123
                     69****999.**********9...4348************************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.49E-3072131No hitNo description
SMARTSM003807.7E-3573136IPR001471AP2/ERF domain
SuperFamilySSF541716.28E-2073131IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.104.0E-2973130IPR001471AP2/ERF domain
PfamPF008474.1E-1373123IPR001471AP2/ERF domain
PROSITE profilePS5103221.10173130IPR001471AP2/ERF domain
PRINTSPR003672.3E-97485IPR001471AP2/ERF domain
PRINTSPR003672.3E-996112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MPFDSPRKRK SRGERERDVA EILRKWREYN QQTETDSSYI DGGIPKRIRK APTQGSRKGC  60
MRGKGGPENR YCEYRGVRQR TWGKWVAEIR EPGKGGRLWL GTFSTSHEAA LAYDEAAKAM  120
YGHSARLNLP YFTTNGSSST AATVSGSVTA FSNESEVCAH EDTNEISGFA QVKLEGNSGD  180
YVTFDSSQCI KEKLNVKEEE RELNSVDAFG TGQESKKETL DDWLMGNGND QAPFRFDVDE  240
TFDISELLGK LDDNNASGQN TMQCQVNRKP SFSDQMQFQD ANLPESLNPM EIAANPEVDY  300
EYHYTQQNEM ENNGIGLDHR RFQDLDVQED LDFGGGKDVH GAT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-1774130360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and abscisic acid-inducible transcription. {ECO:0000269|PubMed:11798174}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g012420.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By high-salt stress and abscisic acid (ABA) treatment. {ECO:0000269|PubMed:11798174}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508876.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like isoform X1
RefseqXP_010508877.10.0PREDICTED: dehydration-responsive element-binding protein 2C-like isoform X2
SwissprotQ8LFR21e-162DRE2C_ARATH; Dehydration-responsive element-binding protein 2C
TrEMBLR0FWR90.0R0FWR9_9BRAS; Uncharacterized protein
STRINGXP_010508877.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM85322538
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40340.11e-142ERF family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Song C,Lee J,Kim T,Hong JC,Lim CO
    VOZ1, a transcriptional repressor of DREB2C, mediates heat stress responses in Arabidopsis.
    Planta, 2018. 247(6): p. 1439-1448
    [PMID:29536220]