PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g011970.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

WRKY

Protein Properties

Length: 292aa MW: 32559.6 Da PI: 6.9494

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g011970.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	87.8	9.5e-28	163	223	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 dD ++WrKYGqKe+ gs+fpr+YYrCt++ +Cp+kk+v+r ++dp ++ +tY+g+H+++ Csa05g011970.1 163 DDNHTWRKYGQKEILGSRFPRAYYRCTHQklyNCPAKKQVQRLNDDPFTFRVTYRGSHTCH 223 8**************************999*************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	4.3E-27	154	223	IPR003657	WRKY domain
SuperFamily	SSF118290	2.22E-25	158	224	IPR003657	WRKY domain
SMART	SM00774	2.9E-36	162	224	IPR003657	WRKY domain
PROSITE profile	PS50811	20.128	163	225	IPR003657	WRKY domain
Pfam	PF03106	2.3E-25	163	223	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MEEVMSMIFH GMKLVKSLES SLPEKRPESL STSLDEIAKT FDDANERLKM FLEIRNSETV 60 LNQTKPVGVS VSNQMLVQME PGLMLQEYWL RCGGSTSTQE TEAMFKTQLM AVDGGGGRNF 120 TVAEGSGASG SSTPRQRRRK DEGEEQTVLV AALRTGNTDM PPDDNHTWRK YGQKEILGSR 180 FPRAYYRCTH QKLYNCPAKK QVQRLNDDPF TFRVTYRGSH TCHIYSTAPT ASATVTATTA 240 MGHSVDYGSP IRDMTDAMFG SSGIGANMDF IFPFNDLPHR FRRLDDGDGH Q*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6ir8_A	5e-21	163	222	9	68	OsWRKY45
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g011970.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AB493584	0.0	AB493584.1 Arabidopsis thaliana At2g40740 mRNA for hypothetical protein, partial cds, clone: RAAt2g40740.
GenBank	DQ056575	0.0	DQ056575.1 Arabidopsis thaliana WRKY family transcription factor (At2g40740) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508813.2	0.0	PREDICTED: WRKY transcription factor 55-like
Swissprot	Q9SHB5	1e-170	WRK55_ARATH; WRKY transcription factor 55
TrEMBL	D7LFT8	1e-177	D7LFT8_ARALL; WRKY DNA-binding protein 55
STRING	XP_010508813.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3641	27	57

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40740.1	1e-166	WRKY DNA-binding protein 55

Publications ? help Back to Top
Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P An extracellular subtilase switch for immune priming in Arabidopsis. PLoS Pathog., 2013. 9(6): p. e1003445 [PMID:23818851] Ramírez V,López A,Mauch-Mani B,Gil MJ,Vera P Correction: An Extracellular Subtilase Switch for Immune Priming in Arabidopsis. PLoS Pathog., 2016. 12(11): p. e1006003 [PMID:27806116]