PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g009870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | C2H2 | ||||||||
Protein Properties | Length: 282aa MW: 31232.4 Da PI: 8.5813 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.1 | 0.00029 | 215 | 237 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp Cg Fs+ +L+ H + H Csa05g009870.1 215 VCPQCGAKFSSVTSLVEHVEKtH 237 6*****************99888 PP | |||||||
2 | zf-C2H2 | 21 | 8.9e-07 | 253 | 275 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L++Hi + H Csa05g009870.1 253 VCPKCSKGFRDPVDLVNHIERdH 275 7******************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 6.28E-12 | 4 | 55 | No hit | No description |
PROSITE profile | PS51039 | 7.774 | 10 | 56 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 2.1E-10 | 11 | 52 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.9E-13 | 13 | 49 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 1.4E-6 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.3E-10 | 91 | 142 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 2.07E-8 | 93 | 141 | No hit | No description |
PROSITE profile | PS51039 | 8.23 | 98 | 147 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.2E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0068 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.01 | 214 | 237 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.45 | 214 | 242 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 5.96E-5 | 215 | 271 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 216 | 237 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 3.2E-4 | 218 | 237 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 9.141 | 252 | 280 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 6.4 | 252 | 275 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 254 | 275 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 282 aa Download sequence Send to blast |
MGTPEFPDLG KHCSVDVCKQ IDFLPFTCDR CLQVFCLDHR SYMKHTCPKG DREDLTVVIC 60 PLCAKGVRLN PNEDPNITWE KHVNTDCDPS NYEKATKKKK CPVPRCKEQL TFSNTIKCRD 120 CNIDHCLKHR FGPDHSCPGP RKLPFMGFLS SSSSSNSRKE AKTTRPNKAS ASSSSTSRWS 180 NLLSSAEGGI SRLGNDISQK LQFSSSSSND GIIEVCPQCG AKFSSVTSLV EHVEKTHERN 240 KKQSHGSKVT VDVCPKCSKG FRDPVDLVNH IERDHRGTSK A* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g009870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY065272 | 0.0 | AY065272.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds. | |||
GenBank | AY096620 | 0.0 | AY096620.1 Arabidopsis thaliana unknown protein (At2g41835) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508672.1 | 0.0 | PREDICTED: zinc finger AN1 and C2H2 domain-containing stress-associated protein 11-like | ||||
Swissprot | Q8VZ42 | 1e-178 | SAP11_ARATH; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
TrEMBL | A0A1J3INK2 | 1e-177 | A0A1J3INK2_NOCCA; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 11 | ||||
STRING | XP_010508672.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM3908 | 27 | 54 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-170 | C2H2 family protein |