PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g009680.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

C3H

Protein Properties

Length: 728aa MW: 79268.1 Da PI: 6.6651

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g009680.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	22.3	2.4e-07	306	326	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg Csa05g009680.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8****.***********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF48403	8.39E-17	40	183	IPR020683	Ankyrin repeat-containing domain
Gene3D	G3DSA:1.25.40.20	1.2E-17	42	185	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	2.40E-14	48	182	No hit	No description
Pfam	PF12796	1.2E-10	85	158	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	16.361	90	193	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0089	90	120	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.4E-5	91	106	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	12.476	125	160	IPR002110	Ankyrin repeat
SMART	SM00248	0.0039	125	157	IPR002110	Ankyrin repeat
PRINTS	PR01415	3.4E-5	144	158	IPR002110	Ankyrin repeat
SMART	SM00356	4.0E-6	301	327	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.9E-5	306	326	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.582	306	328	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.2E-4	306	328	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	6.0E-4	334	364	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	6.409	336	360	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	67	336	359	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 728 aa Download sequence Send to blast
MCCGSDRLNQ IVSSRSSSPV SFEDNNNLVT NLVMNHLRVE TEDTFASLLE LAANNDVEGV 60 RLSIERDPSC VDEAGLWYGR QKGSKAMVND QRTPLMVAAT YGSLDVIKLI VSLTDANVNR 120 ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL 180 MLQELLSADG SSTAERNLRV VTNVPNRSSS PSHSPTGENG GSGSGSPLGS PFKLKSTEFK 240 KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCGR RVCFFAHTPE 360 ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSSAGNG MSHSNMAWPQ 420 PNVPALHLPG SNLQSSRLRS SLNARDIPTD EYNMLGDYDQ QQLLNEYSNA LSRSGRMKSM 480 PPSNLDDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS 540 SPKSVDHSLF SGGGRMSPRN VVEPISPMSS RVSMLAQCVK QQQQQQQQQQ QQQQQQQQQH 600 QYRSLSSREL RTNSSPIVGS PVNNNNNNTW SSSKWGSSNG QPDWGMSSEA LGKLRSSSSF 660 DGDEPDVSWV QSLVKESPTD AKEKAATSSS SGENVKQPNQ MEPVMDHAGL EAWIEQMQLD 720 QLVAQQN*

Sequence ? help Back to Top

Protein Sequence Length: 728 aa Download sequence Send to blast

MCCGSDRLNQ IVSSRSSSPV SFEDNNNLVT NLVMNHLRVE TEDTFASLLE LAANNDVEGV  60
RLSIERDPSC VDEAGLWYGR QKGSKAMVND QRTPLMVAAT YGSLDVIKLI VSLTDANVNR  120
ACGNDQTTAL HCAASGGAVN AIQVVKLLLA AGADLNLLDA EGQRAGDVIV VPPKLEGVKL  180
MLQELLSADG SSTAERNLRV VTNVPNRSSS PSHSPTGENG GSGSGSPLGS PFKLKSTEFK  240
KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF  300
HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTGCGR RVCFFAHTPE  360
ELRPLYASTG SAVPSPRSNA DYAAALSLLP GSPSGVSVMS PLSPSSAGNG MSHSNMAWPQ  420
PNVPALHLPG SNLQSSRLRS SLNARDIPTD EYNMLGDYDQ QQLLNEYSNA LSRSGRMKSM  480
PPSNLDDLFS AEGSSSPRFT DSALASAVFS PTHKSAVFNQ FQQQQQQQQS MLSPINTSFS  540
SPKSVDHSLF SGGGRMSPRN VVEPISPMSS RVSMLAQCVK QQQQQQQQQQ QQQQQQQQQH  600
QYRSLSSREL RTNSSPIVGS PVNNNNNNTW SSSKWGSSNG QPDWGMSSEA LGKLRSSSSF  660
DGDEPDVSWV QSLVKESPTD AKEKAATSSS SGENVKQPNQ MEPVMDHAGL EAWIEQMQLD  720
QLVAQQN*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g009680.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY037232	0.0	AY037232.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	AY093957	0.0	AY093957.1 Arabidopsis thaliana At2g41900/T6D20.20 mRNA, complete cds.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.
GenBank	U90439	0.0	U90439.3 Arabidopsis thaliana chromosome 2 BAC T6D20 genomic sequence, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508649.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30
Refseq	XP_010508650.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 30
Swissprot	P93755	0.0	C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBL	A0A178VPY5	0.0	A0A178VPY5_ARATH; OXS2
STRING	XP_010508649.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1785	28	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G41900.1	0.0	CCCH-type zinc finger protein with ARM repeat domain

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] He L, et al. Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene. Plant Physiol., 2016. 171(3): p. 1675-85 [PMID:27208260]