PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g009320.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 41019.8 Da PI: 7.9525 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 38.7 | 1.8e-12 | 301 | 346 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el+P+ +k + +++L +Av+YIk+Lq Csa05g009320.1 301 SIAERVRRTRISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKDLQ 346 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 14.9 | 295 | 345 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.36E-15 | 298 | 358 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.03E-11 | 299 | 348 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.7E-13 | 300 | 357 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 1.9E-9 | 301 | 346 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 6.9E-12 | 301 | 351 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MDSSNHLYDP NHIASSGSGG GLLRFRSAPS SVLSSFVDQD KSSFDSSDRL LSRFVTSDGV 60 NEDLGVSPKF EDNKSPVSLT NNTSVSYAAA TLPPPQTEPS SFLGLPPHYP RQSKVTMNSI 120 GLEQFLGMSN HHHTKPVESN LLRQSSSPAG MFTNLSDQNG YGPMRNMINY EEDEVSPSNS 180 NGLRRHCSLS SRPPSSLGML SQIPEISPET SFQYSHWNDP SNFIDNLSSL KRETDDDGKL 240 FLGAQNGDSG NRMQLLSHHL SLPKSSSTAS DMVSVDKYLQ LQDSVPCKIR AKRGCATHPR 300 SIAERVRRTR ISERMRKLQE LVPNMDKQTN TSDMLDLAVD YIKDLQRQYK ILNENRANCK 360 CMNKEKKSI* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00646 | PBM | Transfer from LOC_Os08g39630 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g009320.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228981 | 0.0 | AK228981.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor, complete cds, clone: RAFL16-28-L05. | |||
GenBank | BT015339 | 0.0 | BT015339.1 Arabidopsis thaliana At2g42280 gene, complete cds. | |||
GenBank | BT015712 | 0.0 | BT015712.1 Arabidopsis thaliana At2g42280 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010508598.1 | 0.0 | PREDICTED: transcription factor bHLH130-like isoform X2 | ||||
Swissprot | Q66GR3 | 0.0 | BH130_ARATH; Transcription factor bHLH130 | ||||
TrEMBL | D7LI37 | 0.0 | D7LI37_ARALL; Basic helix-loop-helix family protein | ||||
STRING | XP_010508597.1 | 0.0 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6293 | 27 | 45 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42280.1 | 0.0 | bHLH family protein |
Publications ? help Back to Top | |||
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