PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Csa05g009300.1

Organism

Camelina sativa

Taxonomic ID

90675

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina

Family

bHLH

Protein Properties

Length: 267aa MW: 29078.7 Da PI: 6.5249

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Csa05g009300.1	genome	CSGP	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.8	4.6e-09	183	230	4	55
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++iN ++ L+el+P + +k a +L + +++++sLq Csa05g009300.1 183 NHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 230 79**********************9....889**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	1.44E-15	177	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.20E-9	177	234	No hit	No description
PROSITE profile	PS50888	14.634	179	229	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	3.1E-15	179	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.1E-6	183	230	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.7E-8	185	235	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDLTGGFGPR SGVGPVTDDE FRQLVTTMPP ENTGGSFTAL LEMPVTQAME LLHFADSSSS 60 QANITKLAGD NIAPPHDPFG TLTFPSNSLL LDRAARFSVI ATEQNGYISS ADTPSSSANL 120 DGGVKAEPSE TDSFSENQNS KHNKRKEREK KGKSSMKKTK SSVEEDKLPY VHVRARRGQA 180 TDNHSLAERA RREKINARMK LLQELVPGCD KIQGTALVLD EIINHVQSLQ RQVEMLSMRL 240 AAVNPRTDFN LDTILASEVS INQLIT*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Csa05g009300.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK176634	1e-134	AK176634.1 Arabidopsis thaliana mRNA for putative bHLH transcription factor (bHLH048), complete cds, clone: RAFL25-17-F11.
GenBank	AY065411	1e-134	AY065411.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.
GenBank	AY096521	1e-134	AY096521.1 Arabidopsis thaliana unknown protein (At2g42300) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010508593.1	0.0	PREDICTED: transcription factor bHLH48-like isoform X1
Swissprot	Q8VZ02	1e-122	BH048_ARATH; Transcription factor bHLH48
TrEMBL	R0FXN3	1e-142	R0FXN3_9BRAS; Uncharacterized protein
STRING	XP_010508593.1	0.0	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2576	27	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42300.1	1e-120	bHLH family protein

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Li Y,Wang H,Li X,Liang G,Yu D Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana. J. Exp. Bot., 2017. 68(11): p. 2757-2767 [PMID:28591805]