PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Csa05g004150.1
Organism
Camelina sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
Family C2H2
Protein Properties Length: 308aa    MW: 34991.2 Da    PI: 5.7325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Csa05g004150.1genomeCSGPView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.20.00013182204123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     +kC+ Cgk F++   L  H  +H
  Csa05g004150.1 182 FKCETCGKEFKSYQALGGHRASH 204
                     89***********9999998887 PP
2zf-C2H2120.00062235257123
                     EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                     ++Cp+C ++F++   L  H r+H
  Csa05g004150.1 235 HECPICFRVFTSGQALGGHKRSH 257
                     79******************999 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139126.0E-11181206IPR007087Zinc finger, C2H2
SuperFamilySSF576675.95E-8181257No hitNo description
SMARTSM003550.024182204IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.323182209IPR007087Zinc finger, C2H2
PROSITE patternPS000280184204IPR007087Zinc finger, C2H2
PfamPF139124.3E-11234257IPR007087Zinc finger, C2H2
PROSITE profilePS501579.182235257IPR007087Zinc finger, C2H2
SMARTSM003550.15235257IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280237257IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MRSHMLTLSE KPQLYELISC EQQQEEERPS QLSDDDTESD DASSSSDHLK RNRSSTHDDG  60
LEFDFAEDDD DDVESETESS KINNPTRRRS KRTRKLGSFD FDDFKKLETE HHNHSSASDT  120
TTEEDLAFCL IMLSRDKWKQ HNKKKKTTKT RVEEEEGDET DHECEDYKSS KNRGGGGGRG  180
RFKCETCGKE FKSYQALGGH RASHKKNKLA CTTKTEQAKT EYVHGVGVIT EKRVHECPIC  240
FRVFTSGQAL GGHKRSHGSS IGTGRLNVNR IVRIHNEEEV TMKQGTIDLN LPAPNEEDET  300
SLVFDEW*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in stress responses. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapCsa05g004150.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010508210.10.0PREDICTED: zinc finger protein ZAT4-like
SwissprotQ9SHD01e-108ZAT4_ARATH; Zinc finger protein ZAT4
TrEMBLR0FXI71e-120R0FXI7_9BRAS; Uncharacterized protein
STRINGXP_010508210.10.0(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45120.13e-83C2H2-like zinc finger protein