PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g003870.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | LBD | ||||||||
Protein Properties | Length: 130aa MW: 14681.7 Da PI: 5.1019 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 51.5 | 2.8e-16 | 1 | 56 | 45 | 100 |
DUF260 45 llkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +l++lp ++r da+ +l+yeA ar+rdPvyG+vg++++lq+q+++l+aela+++++ Csa05g003870.1 1 MLQRLPLHKRFDAVVTLCYEAMARLRDPVYGSVGHLFSLQHQVMNLQAELAHVQAR 56 7899***********************************************99976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 1.4E-14 | 1 | 54 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 10.779 | 1 | 57 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 130 aa Download sequence Send to blast |
MLQRLPLHKR FDAVVTLCYE AMARLRDPVY GSVGHLFSLQ HQVMNLQAEL AHVQARLSTF 60 QHFPLQSPQL PPIDLAHNNE YPMEQPSNLD SAWEEEPLTQ GGIEDGEFQE LAMQYISRYL 120 PAVKLPAGN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g003870.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB473856 | 1e-98 | AB473856.1 Arabidopsis thaliana ASL23 mRNA for ASYMMETRIC LEAVES2-like 23 protein, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512839.1 | 6e-92 | PREDICTED: LOB domain-containing protein 19 | ||||
Swissprot | O22132 | 7e-68 | LBD19_ARATH; LOB domain-containing protein 19 | ||||
TrEMBL | R0HYN6 | 4e-68 | R0HYN6_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512839.1 | 2e-91 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 3e-70 | LOB domain-containing protein 19 |