PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Csa05g002930.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Camelina
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Family | NAC | ||||||||
Protein Properties | Length: 157aa MW: 18355 Da PI: 7.8368 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 47.4 | 6e-15 | 12 | 136 | 10 | 128 |
NAM 10 tdeelvveyLkkkvegkkleleev.ikev..diykvePwdLpk..kvka..eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.k 96 +de+++ yL++kv+g+ + ++ ++++ ++y+ ePw Lp+ + +ew++ kr++ky+ +++ + +g W +vls+ + Csa05g002930.1 12 SDEDIIEGYLRPKVNGEAIANPRFiVDNMeeELYTREPWLLPQptD--PilNPREWFYLGKRNRKYR---QAEGVHCEGAWILIQGRSPVLSEeS 101 79****************77656524444448*********96332..233778***********96...44557779****8888888888746 PP NAM 97 gelvglkktLvfy...kgrapkgektdWvmheyrl 128 ge +g + + k++++ ++W+m eyrl Csa05g002930.1 102 GEIIGATMRFRYCfrnKNDKSAMAYSNWFMREYRL 136 6677777777766655556666779********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 24.134 | 3 | 155 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.0E-9 | 10 | 136 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 2.75E-23 | 12 | 153 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 157 aa Download sequence Send to blast |
MVSEGEVRSR ISDEDIIEGY LRPKVNGEAI ANPRFIVDNM EEELYTREPW LLPQPTDPIL 60 NPREWFYLGK RNRKYRQAEG VHCEGAWILI QGRSPVLSEE SGEIIGATMR FRYCFRNKND 120 KSAMAYSNWF MREYRLCDKS KPYNTPHVLC KITCNL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Csa05g002930.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010512826.1 | 1e-114 | PREDICTED: NAC transcription factor NAM-B2 | ||||
TrEMBL | R0FSJ7 | 1e-101 | R0FSJ7_9BRAS; Uncharacterized protein | ||||
STRING | XP_010512826.1 | 1e-114 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15427 | 11 | 17 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G64105.1 | 4e-63 | NAC domain containing protein 27 |